BAC Information

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BAC

Clone NameMSMg01-417P19
Chromosome12 (Build37)
Map Location 30,926,135 - 31,085,389
singlet/doubletdoublet
Overlap geneSntg2
Upstream geneLOC629608, Myt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417P19.T7 (MSMg01no417_p19.b1)MSMg01-417P19.TJ (MSMg01no417_p19.g1)
ACCAG513435AG513436
length780782
length of high quality
(start - end)		511 (40 - 550)501 (73 - 573)
definitionCHROMAT_FILE: MSMg01no417_p19.b1 PHD_FILE: MSMg01no417_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:03 2005CHROMAT_FILE: MSMg01no417_p19.g1 PHD_FILE: MSMg01no417_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,926,135 - 30,926,638)(31,084,889 - 31,085,389)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAAT
TCCAAAGTATATGCCACACATCCTTCTCACAGAACAATGCTCTTTCATTG
GAGGAAAGTTGTTTGTATCCATCTGCAAACCCCACTATTCTCTGATGCAA
TCCAGATCCATGCTCTGGACTTACCACTTTCCAGTGGCACAGTGGAACTC
ATTAACCCCTCTAGGAGACCCGATCTTCCCACCTTCTTTATCATGTGTGC
TGATCTCTCCTTTGGTCACAGATATCTCAACAGACAGCAGAGCCCCATGG
CCCCCACTGGATTGGCTGGAGGAGCTGAGGACAAGAACCAGGACACTCCT
TGCCATCTTTGAAGGGGACAACTGCCCAAGTATAGAATTTTAGGGATGCT
TCAGAGTTCTGAGGGGCTAATGAAATTCAATGTCAAAAACAGTAAATGTT
TTTGTGGAAAACAAAAACCAACAGAAACTCAGTTTAACATCTCACCAGCA
ACAGATAAACTGAGAAAATGTTTATGTGTAAACTACGTGGAGGTATCTTA
GTGGACAAAATTGTAAGAAATTTATTCTCAAGCTGCCAACTTCAGTGGAA
ATATAATATTTTAATGTGAGAAGATATAGAAATAATGCTATTTTTGGTTG
AAGACATTATGGATGTGTTAACCCATACTTAAAATAATAAAATAGCTAGC
CTCTCTCTTANATGCTTAATACATACCTTAAACAAAAAACCTGAGGGTAA
ATTTTTAAAAAATTGCAAGCATAAAGTTTT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACACTTAAGAACATGTTAGAGTCATAGG
GTAAATGACAGATGGAAACCAAGTTGTCTCAGTTGAAATGAAGGCTCTCA
GGCAGGGAGCTGGCACATGAATGAAGAGCTGCAGGCCAGTTGGGGAGCTT
CTTGCCAGGCCTATGGGCTAAAGCTTAATGCTGCCAAGTCCTCTTACATT
CTTACCTTTGTATAAAGAGGTCCTGGAAACAGGCAGACCTTCATGTAGCA
ATTGTTATATTTCTCTGTGAGGCATAGATTCTGTTTCCAGGGATACTGGC
ATCTTCTGTGCAAGTGTTTCTGTTCAGATGACACAAAGGCTAGTGCTGTT
GGGCTGCTTGTTGACCTCTGTACAGATGAGCGCATGTTGAAAGTTAAAGT
CCTTAGTTAAACTGTGCTTCTCTCCAGCTCGGGGTTGCTCAGGAGTGCCA
CAAAAGCAGAAATGGCAGTGTAAAAAGTTGCATGTTAGCAGGGACTCAAG
TTCTCCACATGAGGTCTCTCACCTGTGAGCTGGTGCGGACACCCATTCTA
CAGCTCAATACGTTCCTGCTACTCTAACACCAAGCTATGGTTGCACACCA
TATCATGTTGAATTTGGGCTATCTTAAATCTCCTTTTCCCTCAGACCGGN
AAGAGAGGACATCCCCAAATGGGTCCCCTGGGGCTCCAAGTCCCCTGAGA
AAACTTTCCCCCCGGGGAGGAAAACAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_p19.b1 MSMg01no417_p19.b1 CHROMAT_FILE:
MSMg01no417_p19.b1 PHD_FILE: MSMg01no417_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:03 2005
         (511 letters)



>mm_chr12_30925928_30926838
          Length = 911

 Score =  951 bits (492), Expect = 0.0
 Identities = 501/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccaaagtatatgccacacatccttctcacagaacaatgctctttcattggaggaa 67
           ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccaaagtaaatgaaacacatccttctcacagaacaatgctctttcattggaggaa 267

                                                                       
Query: 68  agttgtttgtatccatctgcaaaccccactattctctgatgcaatccagatccatgctct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agttgtttgtatccatctgcaaaccccactattctctgatgcaatccagatccatgctct 327

                                                                       
Query: 128 ggacttaccactttccagtggcacagtggaactcattaacccctctaggagacccgatct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggacttaccactttccagtggcacagtggaactcattaacccctctaggagacccgatct 387

                                                                       
Query: 188 tcccaccttctttatcatgtgtgctgatctctcctttggtcacagatatctcaacagaca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcccaccttctttatcatgtgtgctgatctctcctttggtcacagatatctcaacagaca 447

                                                                       
Query: 248 gcagagccccatggcccccactggattggctggaggagctgaggacaagaaccaggacac 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcagagccccatggcccccactggattggctggaggagctgaggacaagaaccaggacac 507

                                                                       
Query: 308 tccttgccatctttgaaggggacaactgcccaagtatagaattttagggatgcttcagag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tccttgccatctttgaaggggacaactgcccaagtatagaattttagggatgcttcagag 567

                                                                       
Query: 368 ttctgaggggctaatgaaattcaatgtcaaaaacagtaaatgtttttgtggaaaacaaaa 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttctgaggggctaatgaaattcaatgtcaaaaacagtaaatgtttttgtggaaaacaaaa 627

                                                                       
Query: 428 accaacagaaactcagtttaacatctcaccagcaacagataaactgagaaaatgtttatg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 accaacagaaactcagtttaacatctcaccagcaacagataaactgagaaaatgtttatg 687

                                   
Query: 488 tgtaaactacgtggaggtatctta 511
           ||||||||||||||||||||||||
Sbjct: 688 tgtaaactacgtggaggtatctta 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_p19.g1 MSMg01no417_p19.g1 CHROMAT_FILE:
MSMg01no417_p19.g1 PHD_FILE: MSMg01no417_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:03 2005
         (501 letters)



>mm_chr12_31084689_31085589
          Length = 901

 Score =  961 bits (497), Expect = 0.0
 Identities = 500/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacttaagaacatgttagagtcatagggtaaatgacagatggaaaccaagttgtctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acacttaagaacatgttagagtcatagggtaaatgacagatggaaaccaagttgtctcag 642

                                                                       
Query: 61  ttgaaatgaaggctctcaggcagggagctggcacatgaatgaagagctgcaggccagttg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttgaaatgaaggccctcaggcagggagctggcacatgaatgaagagctgcaggccagttg 582

                                                                       
Query: 121 gggagcttcttgccaggcctatgggctaaagcttaatgctgccaagtcctcttacattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gggagcttcttgccaggcctatgggctaaagcttaatgctgccaagtcctcttacattct 522

                                                                       
Query: 181 tacctttgtataaagaggtcctggaaacaggcagaccttcatgtagcaattgttatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tacctttgtataaagaggtcctggaaacaggcagaccttcatgtagcaattgttatattt 462

                                                                       
Query: 241 ctctgtgaggcatagattctgtttccagggatactggcatcttctgtgcaagtgtttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctctgtgaggcatagattctgtttccagggatactggcatcttctgtgcaagtgtttctg 402

                                                                       
Query: 301 ttcagatgacacaaaggctagtgctgttgggctgcttgttgacctctgtacagatgagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttcagatgacacaaaggctagtgctgttgggctgcttgttgacctctgtacagatgagcg 342

                                                                       
Query: 361 catgttgaaagttaaagtccttagttaaactgtgcttctctccagctcggggttgctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 catgttgaaagttaaagtccttagttaaactgtgcttctctccagctcggggttgctcag 282

                                                                       
Query: 421 gagtgccacaaaagcagaaatggcagtgtaaaaagttgcatgttagcagggactcaagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gagtgccacaaaagcagaaatggcagtgtaaaaagttgcatgttagcagggactcaagtt 222

                                
Query: 481 ctccacatgaggtctctcacc 501
           |||||||||||||||||||||
Sbjct: 221 ctccacatgaggtctctcacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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