BAC Information

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BAC

Clone NameMSMg01-419J08
Chromosome12 (Build37)
Map Location 84,117,266 - 84,117,435
singlet/doubletsinglet
Overlap geneRgs6
Upstream geneSipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419J08.T7 (MSMg01no419_j08.b1)MSMg01-419J08.TJ (MSMg01no419_j08.g1)
ACCAG514651AG514652
length820769
length of high quality
(start - end)
---177 (71 - 247)
definitionCHROMAT_FILE: MSMg01no419_j08.b1 PHD_FILE: MSMg01no419_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:10 2005CHROMAT_FILE: MSMg01no419_j08.g1 PHD_FILE: MSMg01no419_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCATTAAAAAATNNNNNCCCCNNNNAGAANNNNNNCATCAAAAAAAG
GGGNGGAANNNGAGTGTTTTTATTTATTTTTTTATATTTAATATAGTATA
TAATATGTAATTTATATTTTAATTATATTTATTTTTTTTTTTGGGGCGGG
GGGGGGGAACAANCCCCNNCTTTTTTTTAATTTTCAAAAGGCTCAAAAAN
CCTCCCCCNGNNNCCAATTTATAAAATAATTAGTATAACGGGAGAATGGG
GGGAAAAANANANNNANANNNNNNNNANANNNNNNNNNNNNNNNNNTTAC
AAGANCAAGAACAAGACAAAAAATAAAAAACCANNCACCCNNANNNAACC
AACAACCCCNCCNNCCCCCNCCCCCCCCCCCNCCCCCCCCCCCCCCCCCC
CCCCCCCCCCNNCCCCCCCCCCCCCCCCCCCCCCNNCCCNCCCCCCCCCC
CCAACCCCCCCCCCNCCCCCCCCCNTTACCCCCCCCCCCNNCCCCCCCCC
CCCTTCNCTTCNCCCCCCCCCNCNNCNCTTCCTTCCCCCCCCCCCTCNCT
TTTCCCTNTACCCTNCCTTNCCCCCCCCTTTTTTCTCCCCTTCCTTCCCC
CCCCCCCCCTTTTTTTCCCTTTTCCCCNNCCNCTNCCCTTCCCCCCCTTC
ACATCCCCTCCCTTTTTTTTTTTTTTTTTCCCNNCCTTTTCTCTCCCCCC
CCCCTTTCNCTCCTCTTTTTCCCCTTATTATCCCTTTATCCCAAAATCTC
CTTTTTTTCCCCCCCCCCCCCCTTTTTTTTCNCACTTTCCAAATTTTCTT
ATTGTTTTTTTTTTTTTTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATGGAAGTCCTCTCTTCAAGACCTTGTT
CTGATTTTCTTCTTTCCTTTCCCAGTTCTGTTTCCTGATAAAGAGGCTGT
TTGAAGTTCAACAGTGGCAATGAACGACCATATGACCATGTTATGTGTGT
CCTGTAGATGTCTCCGATGCTGCTGGTGGGGATTGGGGGGGGGNNNNNNT
NTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTNNNNNNNNN
NNNNNNNNNNNNTTTTTTTTTTNNNNNNNNNNNNNTTNNNTTTTTTNTTT
TTTTTTTTTTNTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNNNNCNNTTNTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTNNTTTTTTTTTTTTTNTTTTNNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT
TTTTTTTTTTTTCTTTTTTTTTCCTTTTTTTTTTTTTTTCCTCCCCTTTT
TCCTTCTCTTTTTCCTTTTTTTTTTTCTTCCTTTTTCTNCTTCTTCTTCT
TCNTCCTTCTTTTTTTTTTGTTCTTCTTTCTTTTTCCCTTCTCGCCTTTT
CTTTTCCTTTTTTCTCTTGCCCCTTTCTCCCCCTTCTTCCCCTTCTTTTT
CTTTCTCTCTTCTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_j08.g1 MSMg01no419_j08.g1 CHROMAT_FILE:
MSMg01no419_j08.g1 PHD_FILE: MSMg01no419_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:10 2005
         (177 letters)



>mm_chr12_84117066_84117642
          Length = 577

 Score =  321 bits (166), Expect = 1e-92
 Identities = 169/170 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatggaagtcctctcttcaagaccttgttctgattttcttctttcctttcccagttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccatggaagtcctctcttcaagaccttgttctgattttcttctttcctttcccagttctg 311

                                                                       
Query: 61  tttcctgataaagaggctgtttgaagttcaacagtggcaatgaacgaccatatgaccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttcctgataaagaggctgtttgaagttcaacagtggcaatgaacgaccatatgaccatg 251

                                                             
Query: 121 ttatgtgtgtcctgtagatgtctccgatgctgctggtggggattgggggg 170
           |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 250 ttatgtgtgtcctgtagatgtctctgatgctgctggtggggattgggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)