Query= MSMg01no419_n04.b1 MSMg01no419_n04.b1 CHROMAT_FILE:
MSMg01no419_n04.b1 PHD_FILE: MSMg01no419_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:28 2005
(331 letters)
>mm_chr12_87995543_87996272
Length = 730
Score = 555 bits (287), Expect = e-162
Identities = 321/333 (96%), Gaps = 3/333 (0%)
Strand = Plus / Minus
Query: 1 ccttttttgtttttgtttttaagtatggaactctttatgaacgtgtgtgtcatccttgaa 60
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 657 ccttttttgtttttgtttttaagtatggaactctttatgaacatgtgcgtcatccttgaa 598
Query: 61 caggggccatgctaatcttctctgtatccttccaattttagtatatgtgctgccaaagcg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caggagccatgctaatcttctctgtatccttccaattttagtatatgtgctgccaaagcg 538
Query: 121 agcac--tctggttgcttttaaggtttgtctgcgggggaaagagctgactctggtgtcgc 178
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 537 agcactgtctggttgcttttaagggttgtctgc-ggggaaagagctgactctggtgtcac 479
Query: 179 ttagctgatgtgccaggactgggtgatttaaagctgaaggctgagcattgtcttcttcag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttagctgatgtgccaggactgggtgatttaaagctgaaggctgagcattgtcttcttcag 419
Query: 239 atgcatattgttttctctcgtttcttcacttggaggtttctgctctactaaatctccaga 298
|||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 418 atgcatattgttgtctcgcgtttcttcacttggaggtttctgctcgactaaatctccaga 359
Query: 299 gctgccaggaacagagagacagtaaatggcttc 331
||||||||||| |||||||||||||||||||||
Sbjct: 358 gctgccaggaagagagagacagtaaatggcttc 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space: 232162
Effective search space used: 232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_n04.g1 MSMg01no419_n04.g1 CHROMAT_FILE:
MSMg01no419_n04.g1 PHD_FILE: MSMg01no419_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:29 2005
(339 letters)
>mm_chr12_88178700_88179438
Length = 739
Score = 540 bits (279), Expect = e-158
Identities = 297/307 (96%), Gaps = 7/307 (2%)
Strand = Plus / Minus
Query: 33 catcctaagcccctgtattctacatctctcctgtccactccttcccactgtagctcacag 92
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 739 catcctaagcccctgtattctacatctctcctgtccactccttcccactgt-------ag 687
Query: 93 ctcacagctatgtcctgtcttgcctccaactccatgctgggcgattacgtcattctggct 152
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 686 ctcacagctatgtcctgtcttgcctccaactccatgctgggcgattacatcattctggct 627
Query: 153 tgagcccttcagtgtctttaattgcccagaggatgaaatccaaattccttaagtcttaag 212
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 626 tgagcccttcagtgtctttaattgcccagaggatgaaatccaaatttcttaagtcttaag 567
Query: 213 tttagaatctggttccctgttgcctttggtagtcccacagctccctgccttacctccact 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttagaatctggttccctgttgcctttggtagtcccacagctccctgccttacctccact 507
Query: 273 ctgcaggctccactcagaggctgttctctacttggaacaactatccctttctgtgtctgg 332
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 506 ctgcaggctccactcagaggctgttctttacttggaacaactatccctttctgtgtctgg 447
Query: 333 ccaatga 339
|||||||
Sbjct: 446 ccaatga 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
