BAC Information

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BAC

Clone NameMSMg01-420G14
Chromosome12 (Build37)
Map Location 33,810,269 - 33,810,894
singlet/doubletsinglet
Overlap genenone
Upstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik
Downstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420G14.T7 (MSMg01no420_g14.b1)MSMg01-420G14.TJ (MSMg01no420_g14.g1)
ACCAG515283AG515284
length728734
length of high quality
(start - end)
---626 (68 - 693)
definitionCHROMAT_FILE: MSMg01no420_g14.b1 PHD_FILE: MSMg01no420_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:15 2005CHROMAT_FILE: MSMg01no420_g14.g1 PHD_FILE: MSMg01no420_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTCATCAATAGTTTGCGGCGATAAAAGAATATTTCTCCCAACAGGAGC
GGAGGAANNCGTCTTCTTACAACACAAGATGNNTAANTAANATAATAACA
ACTTAGAAGCTACAACAGTGTTCAACGTAATAAGGAGGATGGAGCAACTA
GCATGTTGGTGGGACGTACTAACAACCGCAGGAACCCCCCTTCTCTACCA
AGGATTGATGGAAAAAGAATAACCCCCTCTTCCGCCGTGGTGCTGGTTAT
TATCTTCTCGGCCCCACGAAGGAGCAGGAAACCTCTTCTTCATAAGAAGG
AAGCAGGCTCCCCTTCTTTTCTTGTTTAACCGGATGATCCCTCAGGAAAC
CACCAAGAATTTCTTCATCCCCCACGGAAGAAAACCCCTATTAAATGAAG
GAAGCTCTCTAATAACGGGGAATAACACCACCATCTCTAATAAATAAAAA
GACGACTCTACCTAAGGATCGGACTGAACTACTGTTCTACTGCTAGGAAA
CATAATCATGAACGAAGCCTTTCTTTCTTAAAAGAAAGCATTTAGTTGGT
GTTTGCTTACAGCTTACACAGGATTACTCCATTGTCTATCATGGTGGGGG
AACATGGTATGCATGCCCCTCATTGTCATCAGTAATCCAAGAGCTACATC
CTGATCTTTTATTTTTATAGACTACGGCCTGTGCTGTTCTTTTTTAAATC
CCCCCAAGCTGCCACCGCCTCGGTGGTG
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAAATATAGACACTGAAGTCCAACAAAACACA
CTCTACCCAGGCTCTCTTGTAAAGATCCTATGTGACTACATATCTGCTAA
CAAAATGTAGTAAAAAATGTTCTATGATGCGACCAACCATAAAGATGAAG
GGACACTCTTTCCTCTGCTCCTTCCTCCAGCCTAAAATGCAGGTGTTAGA
TGTAATGGCTGGAGCTCCAGAAGTCATTTGGACCTTGAGGTGACCTTAAA
GAAAGAGCCATGCTCCAGGAAGTGGAGGATCATGCTAGACGTGAAGAGTG
GCATCAGAGAATCAGCCCCAGACTCTCAAAGCTTCTCTTTTTTTGAGGAA
GAAACAGACTTCTGTCTTGTGATAGCTCTTGTCACAAAGAGTTTCCCGTC
ACGGGGTAAAAAATGTAACAGATGGACCCAGACGTCTGTTCACGACCATC
TTGTACAGATAAGGGAGGCCAGACTTGGGAAGGAGCTCAAACCTTAGAAG
CAGAGTTGAAACCAGGTCGGTGCCAGGCAAAATGCTGTCTGTGGTCTCAC
CTCCAGCGAGGATGAAGCAGCAAACTGCAGGAGTTCAGAACCAGCCTGAG
CGATATATCAGGATCCTGGAGAAAGGGGGGATGAGGGGAAAAAGGAAGNG
AAGAAGAAAGAAGAAAGAANNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_g14.g1 MSMg01no420_g14.g1 CHROMAT_FILE:
MSMg01no420_g14.g1 PHD_FILE: MSMg01no420_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:15 2005
         (626 letters)



>mm_chr12_33810069_33811095
          Length = 1027

 Score = 1156 bits (598), Expect = 0.0
 Identities = 619/626 (98%), Gaps = 1/626 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaatatagacactgaagtccaacaaaacacactctacccaggctctcttgtaaagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatatagacactgaagtccaacaaaacacactctacccaggctctcttgtaaagatc 260

                                                                       
Query: 61  ctatgtgactacatatctgctaacaaaatgtagtaaaaaatgttctatgatgcgaccaac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatgtgactacatatctgccaacaaaatgtagtaaaaaatgttctatgatgcgaccaac 320

                                                                       
Query: 121 cataaagatgaagggacactctttcctctgctccttcctccagcctaaaatgcaggtgtt 180
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cgtaaagatgaagggacactctttcctctgccccttcctccagcctaaaatgcaggtgtt 380

                                                                       
Query: 181 agatgtaatggctggagctccagaagtcatttggaccttgaggtgaccttaaagaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtaatggctggagctccagaagtcatttggaccttgaggtgaccttaaagaaagag 440

                                                                       
Query: 241 ccatgctccaggaagtggaggatcatgctagacgtgaagagtggcatcagagaatcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgctccaggaagtggaggatcatgctagacgtgaagagtggcatcagagaatcagcc 500

                                                                       
Query: 301 ccagactctcaaagcttctctttttttgaggaagaaacagacttctgtcttgtgatagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagactctcaaagcttctctttttttgaggaagaaacagacttctgtcttgtgatagct 560

                                                                       
Query: 361 cttgtcacaaagagtttcccgtcacggggtaaaaaa-tgtaacagatggacccagacgtc 419
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 cttgtcacaaagagtttcccgtcacggggtaaaaaaatgtaacagatggacccagacgtc 620

                                                                       
Query: 420 tgttcacgaccatcttgtacagataagggaggccagacttgggaaggagctcaaacctta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttcacgaccatcttgtacagataagggaggccagacttgggaaggagctcaaacctta 680

                                                                       
Query: 480 gaagcagagttgaaaccaggtcggtgccaggcaaaatgctgtctgtggtctcacctccag 539
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 681 gaagccgagttgaaaccaggtcggtgccaggcataatgctgtctgtggtctcacctccat 740

                                                                       
Query: 540 cgaggatgaagcagcaaactgcaggagttcagaaccagcctgagcgatatatcaggatcc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgaggatgaagcagcaaactgcaggagttcagaaccagcctgagcgatatatcaggatcc 800

                                     
Query: 600 tggagaaaggggggatgaggggaaaa 625
           ||||||||||||||||||||||||||
Sbjct: 801 tggagaaaggggggatgaggggaaaa 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space:   626472
Effective search space used:   626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)