Query= MSMg01no420_l04.b1 MSMg01no420_l04.b1 CHROMAT_FILE:
MSMg01no420_l04.b1 PHD_FILE: MSMg01no420_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:38 2005
(186 letters)
>mm_chr12_118591896_118592481
Length = 586
Score = 342 bits (177), Expect = 6e-99
Identities = 183/185 (98%)
Strand = Plus / Minus
Query: 1 ttgaagtcttccttgagggccaagatgtctcagcctacagtgttgactaacttagggaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgaagtcttccttgagggccaagatgtctcagcctacagtgttgactaacttagggaat 326
Query: 61 gaatgattgtgagtataacattgagtaaggtaggtgggcagattcaaacttgtgtctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatgattgtgagtataacattgagtaaggtaggtgggcagattcaaacttgtgtctcag 266
Query: 121 tgtatagaagtttgaattctagccccatcagagagaagcagctttctgtctccatgcccc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggatagaagtttgaattctagccccatcagagagaagcagctttctgtctccatgcccc 206
Query: 181 agtgc 185
|||||
Sbjct: 205 agtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space: 102884
Effective search space used: 102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no420_l04.g1 MSMg01no420_l04.g1 CHROMAT_FILE:
MSMg01no420_l04.g1 PHD_FILE: MSMg01no420_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:38 2005
(507 letters)
>mm_chr12_118435052_118435958
Length = 907
Score = 899 bits (465), Expect = 0.0
Identities = 497/511 (97%), Gaps = 8/511 (1%)
Strand = Plus / Plus
Query: 1 tttattcttcctaaaaacttcatcagaaaatcgtaatgactacatcactggcacagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattcttcctaaaaacttcatcagaaaatcgtaatgactacatcactggcacagaata 260
Query: 61 taaaaggctgctgctaagaaaagcccgctgctttgtaaccgcaaggctgctgtgcgttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaggctgctgctaagaaaagcccgctgctttgtaaccgcaaggctgctgtgcgttgc 320
Query: 121 taagcaaccattcctcctcttcctgcttcccaaaggtttccctgctctaaccactgtcgt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcaaccatccctcctcttcctgcttcccaaaggtttccctgctctaaccactgtcgt 380
Query: 181 catccaccgggcgaaatgtctccactgggccttcttgtgctgggttggggaataggaa-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catccaccgggcgaaatgtctccactgggccttcttgtgctgggttggggaataggaagg 440
Query: 239 --agctttgggtctttgagaacggcagctcctgatgttgtgacttggaagcagctgtttg 296
||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct: 441 aaagctttgggtctttgagaacgacagctcctggtgttgtgacttggaagcagc-gtttg 499
Query: 297 gattttgtagaccatcccgttggtgtgagggggatggagagctggtttaaacagatgaat 356
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 gattttgtagaccatcccattggtgtgaggtggatggagagctggtttaaacagatgaat 559
Query: 357 tttctgtaactctgcattcagaagtattccacagcaggggtctaggaggaggctcttaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctgtaactctgcattcagaagtattccacagcaggggtctaggaggaggctcttaaa 619
Query: 417 ggcaccagtattgcctgactctccaaatgtggtcgtgggcggcaggcaccacggtggtac 476
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 ggcacca---ttgcctgactctccaaatgtggtcgtgggtggcaggcaccacggtggtac 676
Query: 477 tctacagggccccagcatggagggagcagtg 507
|||||||||||||||||||||||||||||||
Sbjct: 677 tctacagggccccagcatggagggagcagtg 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
