BAC Information

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BAC

Clone NameMSMg01-421G10
Chromosome12 (Build37)
Map Location 117,915,798 - 117,915,897
singlet/doubletsinglet
Overlap genePtprn2
Upstream geneIgh, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421G10.T7 (MSMg01no421_g10.b1)MSMg01-421G10.TJ (MSMg01no421_g10.g1)
ACCAG516037AG516038
length762792
length of high quality
(start - end)
247 (69 - 315)100 (125 - 224)
definitionCHROMAT_FILE: MSMg01no421_g10.b1 PHD_FILE: MSMg01no421_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:34 2005CHROMAT_FILE: MSMg01no421_g10.g1 PHD_FILE: MSMg01no421_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATCCGCGGAAT
TCAGTCAGTCTAACCGAGACCATGATGAATTATTTTGCTTAGCTTTTCTT
TTTGCTTCTTATTCAGTCCAGGATCCTAAGAATGGTACTGTCCACATTTA
GGTTAGATCTTTCCAGACCAGTTAACCTAATTTAGAAACTTTTTCAAAAG
TTGTGGCCAGAGATTTGTTTTCAATGGTGATTATATTCAAGTTAGCAATC
AGGATTGACCACACAGACTCCTTTAGTGCTTACATGAGGAGTGACAAGAC
ATACACACACACACACTATATCTTTCACACACACACATGCACACATACAC
TTACACACACATACACACACGTGCACACACATGCACGCAGACACAAATGC
ATGCACACTTGTGTGCACTGATGCACATACACATATGTACACACACATAT
GCACAAACACACTCACACAGGCACATTCACACACACCTCTCCACATGCAT
GCATACTCATACACACTTGTACTATCTCCAAGAACAGCTGTTGGGCTGTA
GATGGGAATGCACCAAACTGAAGCGTCTTGTGAGTGTCATGTGTTATCCT
TTTCTCTTGATATGATGATTTGATCTTGTGTAATGAATCCATCCCGATAC
CTTTATTTTTTAAATATTAACTAGCTCACCTATTTGGGAAAGGGTTCCTT
TCTTTGTTGCTCTTTTATTATCCCACTTAGTAGACACTCTTCTTGGTCCT
CGGTCGCTCGGN
ATGCTAGTGCTAGGCCTGGGGGACGGCTGGCCTACATTACTGGGNGAANN
ANAGAAGGATTTGCGACACTCTTGGCGCNNNAAANNGGGACCTGAAAACA
ACAGCGCTACGGNATTGATGACCAGAGCTGACTTGGTGTCTGAGGAACTC
TGGCCAACAGTATAGATGCAGCAGGGGTCTCTAGTTTCTCCATATGTATT
CCAGATTAATGCTGGATCTCTGAATTAGATGTTCACTTCCACAAGTTTCC
TTTAGGAGTCAAAATACTGGGCTAAACTCAGGAAGGAGCAGCATCTAAAA
TACATGGTGTCACTACTTTTTTTTTTTAAACGGGCCAGGCAAAAGCCTGG
CAAGTGTGTCTATATGGCAGAAATCCTGGTGGGCAGGGTTATAATAATAT
CCCGGGCCCTCCTGCTCTAGACCTTTTTCTTTGTCGCTTGTCTTGCTCCC
TGGGTCTACAGGACAAATTCTTGCAGTGTACATCACTTCACAAGGCCAGC
TCCCACAGGATCTTACCTTGCAGACATTTGGCCGACCCCTTGAGGATACT
CGTGTTTGAGGCAGACTTGTGTATCTACCCCTACCATCTACCTCCTAGTT
GTACCTTTTGTTCGCGCTTCTCCTTGTTAGTTCATTCTTGCTTTTTTACC
AGGTGTTCTTCCCTTTGTTTTTGTTCCTCTATATTTCCTTCTTTCCCCTC
CCACTTCCCATCTCTTTGCTCCTGCATTACCGTCCCTATTTTCTTTTATC
TTTGTTTCCTGCTATTTCGTTCTTCTACTTCTCGTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_g10.g1 MSMg01no421_g10.g1 CHROMAT_FILE:
MSMg01no421_g10.g1 PHD_FILE: MSMg01no421_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:34 2005
         (100 letters)



>mm_chr12_117915598_117916097
          Length = 500

 Score =  186 bits (96), Expect = 4e-52
 Identities = 99/100 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctgacttggtgtctgaggaactctggccaacagtatagatgcagcaggggtctctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagctgacttggtgtctgaggaactctggccaacagtatagatgcagcaggggtctctag 241

                                                   
Query: 61  tttctccatatgtattccagattaatgctggatctctgaa 100
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 240 tttctccatatgtattccagattaatgctgaatctctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)