Query= MSMg01no422_h01.b1 MSMg01no422_h01.b1 CHROMAT_FILE:
MSMg01no422_h01.b1 PHD_FILE: MSMg01no422_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:53 2005
(539 letters)
>mm_chr12_86115526_86116464
Length = 939
Score = 957 bits (495), Expect = 0.0
Identities = 525/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 5 gaattctagaggtttctttctcatcatgtccggctctcatcttatttaatttaatccagg 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagaggtttctttctcatcatgtccggctctcatcttatttaatttaatccaga 264
Query: 65 agtgtcttattctaccactgttaattatggaatgtgaagcttttaactcttggccgaaat 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgtcttattctaccactgtaaattatggaatgtgaagcttttaactcttggccgaaat 324
Query: 125 actctcccctcccccagtacaatgtcaaggccacatccaaaggctgttacctcacctgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actctcccctcccccagtacaatgtcaaggccacatccaaaggctgttacctcacctgta 384
Query: 185 atcactggttggaacccagtataatttgtagcacctctaggactccaaaatttggagtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcactggttggaacccagtataatttgtagcacctctaggactccaaaatttggagtta 444
Query: 245 acctctctagcctccagaattgtttatatatctgtgtatagctatatataagacatcatt 304
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 acctctctagccttcagaattgtttatatatctgtgtatagctatatataaaacatcatt 504
Query: 305 ataaactaagttcttatcgtgttttcaatcaggatccagtttgggtagcttgaataccag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaactaagttcttatcgtgttttcaatcaggatccagtttgggtagcttgaataccag 564
Query: 365 aattgaggccaaaattggttagaaaggcaaataagatattgtctgctgtctctctctttc 424
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 565 aattgaggccaaaattggttagaaaggcaaacaagatattctctgctgtctctctctttc 624
Query: 425 ttcttccttccttgtttccttgtttccttccttctttcttttttctttcaacagggtctt 484
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcttccttccttccttccttttttccttccttctttcttttttctttcaacagggtctt 684
Query: 485 ataggtagcgtccagttttggactctcaattctcctgcctcagcctcttcatgct 539
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataggtagc-tccagttttggactctcaattctcctgcctcagcctcttcatgct 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_h01.g1 MSMg01no422_h01.g1 CHROMAT_FILE:
MSMg01no422_h01.g1 PHD_FILE: MSMg01no422_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:53 2005
(248 letters)
>mm_chr12_86285426_86286073
Length = 648
Score = 426 bits (220), Expect = e-124
Identities = 241/248 (97%), Gaps = 2/248 (0%)
Strand = Plus / Minus
Query: 1 ccttgacgggtaagatttgttgatccagtgagaaatcatgtcctttgtaattgttaatac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccttgaagggtaagatttgttgatccagtgagaaatcatgtcctttgtaattgttaatac 293
Query: 61 atttctccctgaatttcctgtcagctctgaagcaaaggaggtatgatgctggttctatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atttctccctgaatttcctgtcagctctgaagcaaaggaggtatgatgctggttctatag 233
Query: 121 ataagcagcacaaagactgaaagctcactgcagttctaggctgacggtgttagcccacta 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 232 ataagcagcacaaagactgaaagctcactgcagttctaggctgac-gtgttagcccacta 174
Query: 181 agtcctagtagacacccaggtgaggtgcctgtgagtattctctccatttgacagagaagg 240
||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 173 agtcctaata-acacccaagtgaggtgcctgtgagtactctctccatttgacagagaaga 115
Query: 241 aaactggc 248
||||||||
Sbjct: 114 aaactggc 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
