BAC Information

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BAC

Clone NameMSMg01-423H20
Chromosome12 (Build37)
Map Location 58,570,810 - 58,571,139
singlet/doubletsinglet
Overlap genenone
Upstream geneE030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423H20.T7 (MSMg01no423_h20.b1)MSMg01-423H20.TJ (MSMg01no423_h20.g1)
ACCAG517633AG517634
length766830
length of high quality
(start - end)		503 (30 - 532)116 (59 - 174)
definitionCHROMAT_FILE: MSMg01no423_h20.b1 PHD_FILE: MSMg01no423_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:11 2005CHROMAT_FILE: MSMg01no423_h20.g1 PHD_FILE: MSMg01no423_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAAATTCTC
AGACAAATGGATGGAATTAGAAACTATCATCCTGAGTGAGGTAACCCAAT
TACAAAAGAACACACATGGTATACACTTACTGATAAGTGGATATTAGCCC
AAAATCTTGGAATACCCAAGATACAATTCACAGACCACATGAAGCTCAAG
AAGAAGGAAGACCAAAGTGTGGATACTTCATAGTATATTTTAAAGAAGAA
AACCCTAATTAATTTTCAAAGACACTGAATATTCTAAATTTCCTTTTGCG
ATATTTCTGGGGACCAGGGTCTCACTTTGCTGCCCACACAGGCTTTAAAC
TCATGAAGCTTCTGCCTTAACCTTCCAAATAGTGGGACTACAGACCTGCA
CCCTGCAGCAACCCCCACAGTAACTTCTACTCATTAATTGCCTGGGTGAC
TAATTGTCTCTGTTTAAATTAATCTTATTTGGGGTCATCAGATGGTGATT
TTCAAATTCTGTTATTCTATTTAAACTTATAGGTGATATTTCTCTGTACA
AAAGGATTTTTCCTTTGAGTACACTTATTTCAGTGTCTTTGTAAGCTCAA
GATGAAGGAGTTCACATCCTGTACCATAGTTCCTTCTTCAAAACCCAAAA
TGGTCCACACTTATTAAAGCCGGTTCGGGGTCCTTTATCTCCTACCTATT
AATGAAGGAAATTTTGTTACCTGCGGACGGGGGATTCCCCCCCCTCAATC
TTTTTTTGACCATTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAAAGACTCAACAAACTATAGTGCCCAAGTGAGGACACCTCA
GTCCCACTTGGGAAAGAGAAGAAAGCAATCATAAGTGGGGAGGGAGGGAA
GGTCTTGGGAGGGAAAGTGGATGGNNCGCCCCCCTCCCCCCCCCCCCCCT
CCCCCCCCCCCCCCCCCTCCCCCCNCCCCCCTCTTGTTTTTTTTTTCCCC
CCCCTTTGTTCCCCCCCCCTCTTCTTTTCTTTCCTTTTTTTTTTCTCCTC
CCTTTTTTTTTTTTTTCCTCTGCCTCTTCCCTTCCTCCCTCTTTTTTTTT
CCTTTCCCCCCCTTTCCCCCTCTTCCTTCCTCTTTTTTCTTTTTTTTCCC
CCCCTCTTTTTCCCTTCCTTTTTCCTCCCTCCCTTTTTTTTTTTTCCCTC
TCTTTTTCCCCCTTTCTTTCCTTTCCCTCGTTGCCCCCCCTCTCTTTTTT
CCTTTTCTTCCCCCTTTCTCCCCTTTCTCCCTTCTTCTCTTTTTTTTTCC
CTTCTCCTTCTCCTCTTTTTTTTTCCCTTTCCCCCTTCCCTTCTTTCCCC
TTTCCCTCTCTTCCCTTTCTCCTCCTCCCTTTCCCTTTTCTCTCTTCTTT
CTCCCTTTCCCCTCTCCCTCTTTCCTCTTTTCCCCTTTCTTTCCTTTCTT
TTTCCCCCCTTCTNCCTCCTTTTTTCCTTTCCCCCCTTTTTTCTTTCCCC
CCTCTTTCTTTTCCCCCCCTCCTTCTTCTTTCTTCTCCTCCCCCCCCCTC
CCCTCCTTTTTTTTCCCCCCCCTCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_h20.b1 MSMg01no423_h20.b1 CHROMAT_FILE:
MSMg01no423_h20.b1 PHD_FILE: MSMg01no423_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:11 2005
         (503 letters)



>mm_chr12_58570237_58571139
          Length = 903

 Score =  576 bits (298), Expect = e-168
 Identities = 322/330 (97%)
 Strand = Plus / Minus

                                                                       
Query: 174 gaaggaagaccaaagtgtggatacttcatagtatattttaaagaagaaaaccctaattaa 233
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 903 gaaggaagaccaaagtgtggatacttcatagtacattttaaagaagaaaaccctaattaa 844

                                                                       
Query: 234 ttttcaaagacactgaatattctaaatttccttttgcgatatttctggggaccagggtct 293
           ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 843 ttttcaaagacactgaatattctaaattttcatttgtgatatttctggggaccagggtct 784

                                                                       
Query: 294 cactttgctgcccacacaggctttaaactcatgaagcttctgccttaaccttccaaatag 353
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 783 cactttgctgcccacacaggccttaaactcatgaagcttctgccttaagcttccaaatag 724

                                                                       
Query: 354 tgggactacagacctgcaccctgcagcaacccccacagtaacttctactcattaattgcc 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 723 tgggactacagacctgcaccctgcagcaacccccacagtaacttctactcactaattgcc 664

                                                                       
Query: 414 tgggtgactaattgtctctgtttaaattaatcttatttggggtcatcagatggtgatttt 473
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 663 tgggtgactaattgtctctgtttaaattaatcttatttggggtcattagatggtgatttt 604

                                         
Query: 474 caaattctgttattctatttaaacttatag 503
           ||||||||||||||||||||||||||||||
Sbjct: 603 caaattctgttattctatttaaacttatag 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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