BAC Information

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BAC

Clone NameMSMg01-424I21
Chromosome12 (Build37)
Map Location 5,350,555 - 5,350,763
singlet/doubletsinglet
Overlap geneKlhl29
Upstream geneNcoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332
Downstream gene2810032G03Rik, LOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I21.T7 (MSMg01no424_i21.b1)MSMg01-424I21.TJ (MSMg01no424_i21.g1)
ACCAG518447AG518448
length732793
length of high quality
(start - end)
239 (76 - 314)195 (122 - 316)
definitionCHROMAT_FILE: MSMg01no424_i21.b1 PHD_FILE: MSMg01no424_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:32 2005CHROMAT_FILE: MSMg01no424_i21.g1 PHD_FILE: MSMg01no424_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGCATCCGCGG
AATTCTGGCTGTTGCGATTATTGCCAACAGAGAGCTTCTAGGAGTCCAGT
CTACGATGTGAAGTCCCCTCTCTGTGGATATCAGCTCTCCACCCTGCTGA
GAAGCATCTCACAGCTTTCCCCACAGTTTTTGGCTTTTGTTTTATTGCCT
TTTCCCCCCCTCTTACAGTCTTTTTGTTTTGTTTTGTTTCTGTTTTTTTG
TTGTTGTTGTTGTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGC
CCTGGCTGTCCTGGAATTTTCTTTGTAGACCAGGCTGGCCTCAAACTCAG
AAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTCTGCACCA
CCACACCCAGCTCCCTCTTACACTCCATATATTGTTCTTGCTGCATCATA
GAGCCATCGAAAGTGGAGTCCAGGTGAGGACACCATGTCCCTAGTGGTAC
TGCCCCTGGCTGGAGGGCCCCAGTTAGGGTGTATACAACCATAACATAGA
TGCTGTTCTACCATTTTTCCGTAGCCTTACCTGGCATCAAGCGAATGTAC
TACCTGCAAGGCTACCGCAGACCTATTTTCCACCCACACCAAGCTTCATC
TCTTTTCCTTAAACCCCCCTTGGCGATTCGCCCAACTAACTCTATCTTCC
CTGATACCCCCTCACCTCCTATCCATAAATAC
CGATGATGTGGTAGCCTGGNGGCGCCTGGCTTCAAATTTAGGNGAACNAN
ANAAGGTTTGCGCCATTCAGGAGNNNCAAGCNAAGNAGTTATAAGCTGGC
CAATGCGGGCGTTGTGACCTGAATTTGGATCTTCTGAAAACTTTTTTTGT
TTTTGTTTTCGCTTTTAGTTTTTTTGAGATAGGGTTTCTCTGTGTAGCTC
TGACTGTCCTGGAACTTGTTCTTTAGACCAGGCTGGCCTTGAACTCAGTT
TTCCATCTGCCTTTGCCTCCTGAATGCTGGGATTAAAGGCACATACCACC
ATGCCCAGCTATGCTGTTTTTTTTTTTTAAACCTNACTTGACATTGCTTT
ATTTTTTATTACTGTACCCGTCTCTGTGTACTATCAAGAACGTACAGAAA
GGAAGACGTCTGGCTCCATCCCAGTTCTTAATGCCCAGTACTCGTTAGCG
TGTTATTAGCACTTACATATAGCCTGCTCCCATTCTAGAATGTTCTTTTA
TACTCACACTCTCCCTTCCCCATTTCCTGATCATTTGTTTGCTTGTTCAC
TCCCTCCTGCCGCTTTCTTTGCCGTCCTTTTCTTTGTTCTACGCTTCCTC
ACTTTTCCCCTTTTATCTTCTCCTCGTTTCTCCTTTCTGCCTGCTCTTCT
TTCCCATCACCATGTCCACTTCCTTTATCTTTTCTTTTTTTCTCCCTTAC
CCCCCCAGCCCCCTCTCCCTCCTTTTTTCTCCTTCTTCCTCTTTCTTTCC
TTCCCTCCCCCTTCCTCCCAATCTCTCTTCTCTTTTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i21.b1 MSMg01no424_i21.b1 CHROMAT_FILE:
MSMg01no424_i21.b1 PHD_FILE: MSMg01no424_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:32 2005
         (239 letters)



>mm_chr12_5350419_5351056
          Length = 638

 Score =  315 bits (163), Expect = 1e-90
 Identities = 206/241 (85%), Gaps = 34/241 (14%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagagagcttctaggagtccagtctacgatgtgaagtcccctctctgtggatatcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aacagagagcttctaggagtccagtctacgatgtgaagtcccctctctgtggatatcagc 286

                                                                       
Query: 61  tctccaccctgctgagaagcatctcacagctttccccacagtttttggcttttgttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctccaccctgctgagaagcatctcacagctttccccacagtttttggcttttgttttat 226

                                                                       
Query: 121 tgcctttt--ccccccctcttacagtctttttgttttgttttgtttctgtttttttgttg 178
           ||||   |  ||||||| ||||||||||||||||||||||                    
Sbjct: 225 tgcc---tcccccccccccttacagtctttttgttttgtt-------------------- 189

                                                                       
Query: 179 ttgttgttgttgtttttgttttttgagacagggtttctctgtgtagccctggctgtcctg 238
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ---------ttgtttttgttttttgagacagggtttctctgtgtagccctggctgtcctg 138

            
Query: 239 g 239
           |
Sbjct: 137 g 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)