BAC Information

Click to search

BAC

Clone NameMSMg01-424N20
Chromosome12 (Build37)
Map Location 117,172,708 - 117,404,482
singlet/doubletdoublet
Overlap geneIgh, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058
Upstream geneEG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81
Downstream geneWdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424N20.T7 (MSMg01no424_n20.b1)MSMg01-424N20.TJ (MSMg01no424_n20.g1)
ACCAG518684AG518685
length767769
length of high quality
(start - end)		506 (83 - 588)535 (75 - 609)
definitionCHROMAT_FILE: MSMg01no424_n20.b1 PHD_FILE: MSMg01no424_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:55 2005CHROMAT_FILE: MSMg01no424_n20.g1 PHD_FILE: MSMg01no424_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:55 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(117,172,708 - 117,173,213)(117,403,948 - 117,404,482)
sequence
TTAGTCCTACATGTCACNNNNNNGNNTCNCTATTCCAAGAGGATGCCGCG
GAATCCACCGGTACCAAAAAAAATGATAAGNCTGACATTGACATGAGGAG
ACATGCTCACTGAATATAGAAGTGGGTTGTGAATCGCTACCTATCTATCA
TATGCCATTGCTGGTAAAAGCAAGCATTCTGTGGTTACAAAGGTAACAAG
AAGGAACTTCTGTGTTGCACAACCATGAAGTGAAATGATTTTGCTTTTAG
GCATAAAACTTGCTAATGTATTTGCAGTGATATCTGAAGAATAGCAAGCA
TCTTCTAAAGACAATGCACTGAAGAAATGGTACATAGGGTTGTGGAGTTA
CAACTAAAATAATAAGCCCTATCGTTCCTATAGAGTAAAAACTAAAATTC
CTTAGAAGAGAAAAAGAGAATGATCTGAAGGTCTTCTTTGTATGTGAGTC
CCTTGAGAACAAATGTAGTAGCTCATCTGATGTTCTTCATACTAAATCCC
ATGAAGTAATATTGAATATACTCAGGCTACAGCCCATAGTTGTCTTAGTT
CGTGTTTTACAGCTGTGAATAGACACCATGACCAAGGCAAGTCTTATAAA
GGCCAACTATCAATTGTGTCCTGACTTACATGTTCAGAAATTCAGTCAAG
TATCATTCAGGTAGGAAACAAGTCTGTATCTAGGCCGGGCAAAGTACAGG
AAGGACTTGAAAGTTTCTCCATCTTCCTCTGAAAGGGTTTAAAACAAATG
CTTACCTTTAGGGAACT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACAGAAATATCCTGACAGTTTGTATTTTGTGAGTCTCA
CAGCTGCCCGATGATGAGAGTTTTATCAGCACCTCCTCTAAATTCAAACT
CTTTGGGGGCAAAGACCAGATTCCCCTGGAGTGAGTGCTGTACAGTGTTG
GACACACGGCTTTCTAGGTGCATGATGGTGATGAAAAGGTCATGGAAGAT
GTTTCCCTGGGTCCCAGATTTTGGTAAGATACCTGCTTGGGAAGGGTTGT
TGATCCCAAAGCCAGGGCCATATTTCTGTGTTTGTCTAGCATACAGCTAT
CAAGGAGATCAGGACAGCTTGGCAAATCACATACCACAAAACTTGTGAAC
TTACTGATTGTTCAATAGATTCTGACATTGTTAAAAGACACATAACATGT
TCAGGACAGCTGGGTTTCATAGATCTTCTCTTCTTATAGTCAAACCCACC
AGCTGGAGCAAGCACTGAGTCATTGTGGTCTGGGAGAAGTTGTGAGGTGT
TGAAGACAAGAAGGGCTACTGCTTCAATAGAAAAAGCATCAAATTTAAAT
TCCTTACAGATTGTGTGGCTGGGTTCTGTTACATACTCTTTCCTGATATT
CCCTCATGATTCCTCAAACCTTTACAAGTCTCTGTCACACAGGAAAGTTC
ATATCCTCACTTTCTCTCTTTTCCATTTCCCCTTTCCATCCTCTCTTTGG
TCGGTTCCCCTTCGTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_n20.b1 MSMg01no424_n20.b1 CHROMAT_FILE:
MSMg01no424_n20.b1 PHD_FILE: MSMg01no424_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:55 2005
         (506 letters)



>mm_chr12_117172508_117173413
          Length = 906

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacattgacatgaggagacatgctcactgaatatagaagtgggttgtgaatcgctacct 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tgacattgacatgaggagacatgctcactgaatagagaagtgggttgtgaatcgctacct 260

                                                                       
Query: 61  atctatcatatgccattgctggtaaaagcaagcattctgtggttacaaaggtaacaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctatcatatgccattgctggtaaaagcaagcattctgtggttacaaaggtaacaagaa 320

                                                                       
Query: 121 ggaacttctgtgttgcacaaccatgaagtgaaatgattttgcttttaggcataaaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacttctgtgttgcacaaccatgaagtgaaatgattttgcttttaggcataaaacttg 380

                                                                       
Query: 181 ctaatgtatttgcagtgatatctgaagaatagcaagcatcttctaaagacaatgcactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatgtatttgcagtgatatctgaagaatagcaagcatcttctaaagacaatgcactga 440

                                                                       
Query: 241 agaaatggtacatagggttgtggagttacaactaaaataataagccctatcgttcctata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatggtacatagggttgtggagttacaactaaaataataagccctatcgttcctata 500

                                                                       
Query: 301 gagtaaaaactaaaattccttagaagagaaaaagagaatgatctgaaggtcttctttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtaaaaactaaaattccttagaagagaaaaagagaatgatctgaaggtcttctttgta 560

                                                                       
Query: 361 tgtgagtcccttgagaacaaatgtagtagctcatctgatgttcttcatactaaatcccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgagtcccttgagaacaaatgtagtagctcatctgatgttcttcatactaaatcccat 620

                                                                       
Query: 421 gaagtaatattgaatatactcaggctacagcccatagttgtcttagttcgtgttttacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagtaatattgaatatactcaggctacagcccatagttgtcttagttcgtgttttacag 680

                                     
Query: 481 ctgtgaatagacaccatgaccaaggc 506
           ||||||||||||||||||||||||||
Sbjct: 681 ctgtgaatagacaccatgaccaaggc 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_n20.g1 MSMg01no424_n20.g1 CHROMAT_FILE:
MSMg01no424_n20.g1 PHD_FILE: MSMg01no424_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:55 2005
         (535 letters)



>mm_chr12_117403748_117404682
          Length = 935

 Score = 1004 bits (519), Expect = 0.0
 Identities = 531/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacagtttgtattttgtgagtctcacagctgcccgatgatgagagttttatcagcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgacagtttgtattttgtgagtctcacagctgcccgatgatgagagttttatcagcacct 676

                                                                       
Query: 61  cctctaaattcaaactctttgggggcaaagaccagattcccctggagtgagtgctgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cctctaaattcaaactctttgggggcaaagaccagattcccctggagtgagtgctgtaca 616

                                                                       
Query: 121 gtgttggacacacggctttctaggtgcatgatggtgatgaaaaggtcatggaagatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtgttggacacacggctttctaggtgcatgatggtgatgaaaaggtcatggaagatgttt 556

                                                                       
Query: 181 ccctgggtcccagattttggtaagatacctgcttgggaagggttgttgatcccaaagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccctgggtcccagattttggtaagatacctgcttgggaagggttgttgatcccaaagcca 496

                                                                       
Query: 241 gggccatatttctgtgtttgtctagcatacagctatcaaggagatcaggacagcttggca 300
           |||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gggccagagacctgtgtttgtctagcatacagctatcaaggagatcaggacagcttggca 436

                                                                       
Query: 301 aatcacataccacaaaacttgtgaacttactgattgttcaatagattctgacattgttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aatcacataccacaaaacttgtgaacttactgattgttcaatagattctgacattgttaa 376

                                                                       
Query: 361 aagacacataacatgttcaggacagctgggtttcatagatcttctcttcttatagtcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagacacataacatgttcaggacagctgggtttcatagatcttctcttcttatagtcaaa 316

                                                                       
Query: 421 cccaccagctggagcaagcactgagtcattgtggtctgggagaagttgtgaggtgttgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cccaccagctggagcaagcactgagtcattgtggtctgggagaagttgtgaggtgttgaa 256

                                                                  
Query: 481 gacaagaagggctactgcttcaatagaaaaagcatcaaatttaaattccttacag 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gacaagaagggctactgcttcaatagaaaaagcatcaaatttaaattccttacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |