BAC Information

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BAC

Clone NameMSMg01-426F24
Chromosome12 (Build37)
Map Location 120,977,635 - 120,978,136
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426F24.T7 (MSMg01no426_f24.b1)MSMg01-426F24.TJ (MSMg01no426_f24.g1)
ACCAG519832AG519833
length774758
length of high quality
(start - end)		505 (45 - 549)459 (79 - 537)
definitionCHROMAT_FILE: MSMg01no426_f24.b1 PHD_FILE: MSMg01no426_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:53 2005CHROMAT_FILE: MSMg01no426_f24.g1 PHD_FILE: MSMg01no426_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATGACTTTCCTGGCTTAGCATTTACCAGGAATTGAATAAACCCA
AGAAAATTAAATATTTTGCTAAACATCATTTATTTTATGGTGACGACATC
ATAGGAATGAGGTTTTCTTTAAGTCAAACTCATCATATATTTATGTGATC
TGCAAGAGTGCATGCTTTTCCATGAAAGTTCTCAGTAATTCTCAAGAATC
AAAGAGAATTGGCTAAGAAATGTGGCCCAGAACTCAAAGATATACATAGC
CAAGTGACATGTTATTTTTCCAACTCTTAAAATTCTTTTCCTATAGCAGC
ACTGTATTATCTATGTAAAAATTAGATGATATAGTCAGAAGCAGAGGTAA
GAAAAACCCTCTACAGTTCTATATTCTTATTACTAATTGTATTTTGTACA
TGTAATTTAATCTATGTGTGTACATATTAGTTCCTTTTCTGTCATTGTGA
TAAAAACAGCATAATGAAGGCAACTTATAGACAGGCTAGTTTTTTGAGGG
GTTATGGTTTCAGAAGGATAGAGTCTGTCATGGTGGGAGAGCATGTCAGC
AAGCAACAAGCTGAAACAACAGGATGCTGAGGGCTCAGCCTATAATTTCA
AGCAGAAGGGGGTTGAGTGGCCCAAACATACTTCTTCCCGCAAGGGGACA
CCTTCTTAACTTTTTATAAAAAAGGCCCCCAATGTGGGCCACGTATTCAA
ATGTTCCAAACAAGCGGGACCCTC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTCTGATTTCTGTAGTGG
CTCACGAGTTTGTAATTCAATCAACAGTTAATGAGAGTTTCTATTTTTGC
CATAACCCCTCCAGCATTTATTGTCAGCTCTTTTGTTGATTTTTGTTATC
ATTCTGACTGGAGTAAGATGGATATCATGTGGGTTCCAGGCCCACTTTTC
AAATGACTCATTTGTTTTATCAACTTTTTGTGTTATAAGTTCTTTATATA
TTCTAGATATCAATCCTGTCATATGTTGAGGTGATAAAAATTCTCTCACA
TTCTGTGTGCTTCCCCTTCATCCAGTTAATTATTTCTTTATATGTACAGA
AGCTTTTTAGTTTAAAGAAATCTCAGTTGTCAGGTGCTGGTCTTTTCTAC
ACCTGTATTATGTAAGATACTGACAATCTTTTTCTCTAGCAGTTTCAATG
TTTCAGATTTCACATTTGGTTTTTGATAAATTTGGAGTTAAGTTTTTTGT
GCAGGGTGTGGCCCTGCAGTTTCCCAGACCATTTATTGAAGATGCTTTCT
TTTTCTATAGGATATAATTTGTCCCTTTTTGCCAAAATAAAGTGGCTAAA
GTTACGTGCACTCCCGGTCGTGAATTTTATTTTTGTTCTCCCGACACTAA
TTTTCGTTTTTTTTTGCCCTCACTACCTTCTTTTATCCAAATACATTTCT
TTTAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_f24.b1 MSMg01no426_f24.b1 CHROMAT_FILE:
MSMg01no426_f24.b1 PHD_FILE: MSMg01no426_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:53 2005
         (505 letters)



>mm_chr12_120977507_120978411
          Length = 905

 Score =  928 bits (480), Expect = 0.0
 Identities = 497/504 (98%), Gaps = 4/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagatgactttcc--tggcttagcatttaccaggaattgaataaacccaagaaa 61
           ||||||||||||||  | |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggaattcagatgac--tacagtggcttagcatttaccaggaattgaataaacccaagaaa 573

                                                                       
Query: 62  attaaatattttgctaaacatcatttattttatggtgacgacatcataggaatgaggttt 121
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 572 attaaatattttgctaaacatcacttattttatggtgacgacatcataggaatgaggttt 513

                                                                       
Query: 122 tctttaagtcaaactcatcatatatttatgtgatctgcaagagtgcatgcttttccatga 181
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cctttaagtcaaactcatcatatatttatgtgatctgcaagagtgcatgcttttccatga 453

                                                                       
Query: 182 aagttctcagtaattctcaagaatcaaagagaattggctaagaaatgtggcccagaactc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagttctcagtaattctcaagaatcaaagagaattggctaagaaatgtggcccagaactc 393

                                                                       
Query: 242 aaagatatacatagccaagtgacatgttatttttccaactcttaaaattcttttcctata 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaagatatacatagccaagtgacatgttatttttccaactcttaaaattcttttcctata 333

                                                                       
Query: 302 gcagcactgtattatctatgtaaaaattagatgatatagtcagaagcagaggtaagaaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcagcactgtattatctatgtaaaaattagatgatatagtcagaagcagaggtaagaaaa 273

                                                                       
Query: 362 accctctacagttctatattcttattactaattgtattttgtacatgtaatttaatctat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 accctctacagttctatattcttattactaattgtattttgtacatgtaatttaatctat 213

                                                                       
Query: 422 gtgtgtacatattagttccttttctgtcattgtgataaaaacagcataatgaaggcaact 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gtgtgtacatattagttccttttctgtcattgtgataaaaacagcataatgaaggcaact 153

                                   
Query: 482 tatagacaggctagttttttgagg 505
           ||||||||||||||||||||||||
Sbjct: 152 tatagacaggctagttttttgagg 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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