BAC Information

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BAC

Clone NameMSMg01-426M05
Chromosome12 (Build37)
Map Location 100,767,641 - 100,768,121
singlet/doubletsinglet
Overlap geneLOC100039892
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M05.T7 (MSMg01no426_m05.b1)MSMg01-426M05.TJ (MSMg01no426_m05.g1)
ACCAG520124AG520125
length837783
length of high quality
(start - end)
39 (68 - 106)492 (68 - 559)
definitionCHROMAT_FILE: MSMg01no426_m05.b1 PHD_FILE: MSMg01no426_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:25 2005CHROMAT_FILE: MSMg01no426_m05.g1 PHD_FILE: MSMg01no426_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGACTACTNATCATGAGGGGCGCGGAATCCTTCT
CTTACATATCTAGGCCCCCCAATCCACAGAAAGGGAGAACAAAATGGTTG
TCGTTAACAGGCTATTTTCACAGGCGCGGTGTTTCAAGTGGACACAATGG
AGGGTTGGTGATAACCATGTGCATTCAGTGCCATTCATATATTCAGTACC
ATGGTTACACATGATCACAAATTCTATGCGATATCGTAGCACGGTGCAAA
CTGTCGGTGCACGAGAATCGAGACCTGACACGGTAAGTCCCGCTGAGCCA
CCGAAGTATTTTTTTTTTTATTACCAACCCACCATCCGGCTCAACAGATA
TTCTTATTTCGCCCTCTTTTCTGCTTCCTTACGTCTTCCTGTCTTACGAT
TACTGTACGTTAACCTTTGTTTTTTTTGCTCTATCATTCTTTGAATTTTT
TTCTTTTTTTTCCCATGTTACCTTCCTTCTTCTCCTTTTTTTACCTTTTA
TTTTTTTCTTCCCATTATTTCTTTTCCATTACTCTTTATTTTCTTTCTCT
TTTTCTTTACTATTTATCACTTTACTCATTTCCATTACTATCATTTTATT
ACTATCTTCTTTCCCTCTTCCTTTATTTTATCTTCTCCTTCTCTATTCTT
TCTATTTACCTTCTGTCCCCACTTCTCCTCATTTTATATTTTTCTTTCTT
TTTTTTCTCTACACTTTTCTTCCCTCTTCTACTCTCCCATCCTCCTTTTC
TTCCCCTTCTAATATTTTTTTACCTCCCCATTCTCATTCAAGCTCCTCCA
TACACATTTTCATTTCATCTCCTTTCTCATCTCTCTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCGCAGGACAAAAGCCTAGCCTGCAACTCATG
GCTGCCACACAAGACACACAACTCCAGAGATAGGGACCACACGATATGTG
ACAGTCAGCACTTCACAGCTAAGAGGAATGGCTAACTTGGCTCTGGGCTG
GCATCTTCTAACTTAAGACTCACAGAGAACACCAACGTTAGCTAGTGATA
ATTTCTTACTTCGGATTAGTAATTACACTCAGCTCCTGCTCTGTCTACCT
GTGGATGTCCTAGGCAAGGTTGTGAACACAGGACCAACATCACGTTGGAT
ATTTGGGTAGGGCTAGAAACTGCCTCGCCCTCTTCTGTAGTGTGTGGAAA
ATTCTTCATTCTATACGCCTAGTGCCTGGACCTGTTCCCATTTACCATAT
CAAACCCGACTCAAGTCTGGCAAAGGAGAGAATCGAGGCTTTGATATCTG
CACCAGGTCTCACTGAAGCCAATTCAACTCCAGCTGTCCTAGGACTCTTA
TTTTCCGTCTGTTTTTCACGCCTCGGATGGCTTCCAAGCTAATTTCCCAG
ACCTCCACTCTAGGCAACTCTGGGGAGCCAGATCAGGGCGGGGGACATCT
CTGAAATATTCAAACAGCCCCGTGCTCCGGGTTTTTACAACTTTGTAAAA
AATTTAACTTGGATGTATTTACAACCGTTCCTATTGAACAATTTAAAGCC
CCTTGCTCCCGCCAACGGAAATGGGTGCCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m05.g1 MSMg01no426_m05.g1 CHROMAT_FILE:
MSMg01no426_m05.g1 PHD_FILE: MSMg01no426_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:25 2005
         (492 letters)



>mm_chr12_100767441_100768332
          Length = 892

 Score =  843 bits (436), Expect = 0.0
 Identities = 473/492 (96%), Gaps = 11/492 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgcaggacaaaagcctagcctgcaactcatggctgccacacaagacacacaactccag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgcaagacaaaagcctagcctgcaactcatggctgccacacaagacacacaactccag 260

                                                                       
Query: 61  agatagggaccacacgatatgtgacagtcagcacttcacagctaagaggaatggctaact 120
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 agatagggaccacatgatatgtgacagtcagcacttcagagctaagaggaatggctaact 320

                                                                       
Query: 121 tggctctgggctggcatcttctaacttaagactcacagagaacaccaacgttagctagtg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctctgggctggcatcttctgacttaagactcacagagaacaccaacgttagctagtg 380

                                                                       
Query: 181 ataatttcttacttcggattagtaattacactcagctcctgctctgtctacctgtggatg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattttttacttcggattagtaattacactcagctcctgctctgtctacctgtggatg 440

                                                                       
Query: 241 tcctaggcaaggttgtgaacacaggaccaacatcacgttggatatttgggtagggctaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tcctaggcaaggttgtgaacacaggaccaacatcacgttggatatttgggtggggctaga 500

                                                                       
Query: 301 aactgcctcgccctcttctgtagtgtgtggaaaattcttcattctatacgcctagtgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgcctcgccctcttctgtagtgtgtggaaaattcttcattctatacgcctagtgcct 560

                                                                       
Query: 361 ggacctgttcccatttaccatatcaaacccgactcaagtctggcaaaggagagaatcgag 420
           ||||||||||||||||||||||||||||||||||||           |||||||| | ||
Sbjct: 561 ggacctgttcccatttaccatatcaaacccgactca-----------ggagagaaccaag 609

                                                                       
Query: 421 gctttgatatctgcaccaggtctcactgaagccaattcaactccagctgtcctaggactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gctttgatatctgcaccaggtctcactgaagccaattcaactccagctgtcctaggactc 669

                       
Query: 481 ttattttccgtc 492
           ||||||||||||
Sbjct: 670 ttattttccgtc 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)