BAC Information

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BAC

Clone NameMSMg01-426N21
Chromosome12 (Build37)
Map Location 121,221,698 - 121,222,016
singlet/doubletsinglet
Overlap geneGm528
Upstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633, LOC100043017
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426N21.T7 (MSMg01no426_n21.b1)MSMg01-426N21.TJ (MSMg01no426_n21.g1)
ACCAG520203AG520204
length803786
length of high quality
(start - end)
384 (47 - 430)319 (76 - 394)
definitionCHROMAT_FILE: MSMg01no426_n21.b1 PHD_FILE: MSMg01no426_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:33 2005CHROMAT_FILE: MSMg01no426_n21.g1 PHD_FILE: MSMg01no426_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTAATACCTACCGAATGGCTGAGAAGCATCTGAAAAAAAT
GTTCAGCATCCTTAATCATCAGTGAAATGCACATCAAAGCAGCCCTGAGA
TTCTATCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAG
CAGATGCTGGCGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTATGGCAGTTCCTC
AGACAATTGGACATAGTACTACTGGATTATCCCGCAATACTTCTCCTGGG
CATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACCGACAATGTGGTACTTTTTACCCAT
GGATTACCACTTCCCTTTTTTTTAAAAAAGGAATTTTTTTAAATTCTCTC
TTCATTGGATGGCTCCGGCGATGGTCTTCTCCTTGTTGTGGCGATCCTCT
TTCTTATAAAATTCCTCCTGAATTTTTCCCTCTGTTACGGTATCTTATCC
CCCTACCTTCCTTTTCTTCCCTCCCCTTTTTCCTTTTCCCCTCCTCTCTT
ACCTCTCTCATAATTATACACTTTTCACTTTTTTATTCTCTCCTCTTCTC
CTCTCTTTGCGCCGCCATCTCTCCCCCTTTTTTTCCCTTACTACCCCCCT
CTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAAGACTAGATTTGACCTCACAGT
AGCTTGTGTTCTCTTACAGTAAATAATCTTCCTTTTATTGGAAATGTTTA
AGGGAAGTACAAATGGTCACTTGTTAGGGTATAGAAGAGTATGACGGGAT
AATTCTGACATGAAGTTGGAATAGAATCCTATAAGATATACTGAGCTGGA
GGCTCAATTTTCGAAGAATTAGAGTTCAGAGATCTACATGTGGTATTGTG
CAATTTATTTTAGATGAAACAGAAGATATTTTATATTCCTGTAATAGAAA
AAGTTCCTGTTCTAGGACCTTATTGTTATGATCTTAAATTAGTCAAGAAT
TTATCAGTGTATAGATGCACTGATGAATTGAATTTTGTTTATTGCCGCAT
TTATCCTTATGGAAGACGGTCACATTATTTTGCTCCTTCCGTTTTTTCTG
TCAGAACATCTCTTTTAGTCCATATGGCTCCAACCTCCACTCTCTTCCCC
CATTTCTCATTTTGGTATTCTAGTCTTTCTCCCTCTCTACCCTTTCTCTT
CCCATCCCTCTATACCTTTTCCATATCACCTCCCTCCCCTTCCCTTTTTT
CTCTTTATCCTCGTCCACTTCTATATTTTCTATATTTTTTTTTTTCTCTC
ATTTCCTATCTCAACCTCCTTTCCTATTCCATCTTTCCCCCATCCTCTTT
CTCTTCTTATTTCATCTTTCCTGTCCTCTTAACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_n21.g1 MSMg01no426_n21.g1 CHROMAT_FILE:
MSMg01no426_n21.g1 PHD_FILE: MSMg01no426_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:33 2005
         (319 letters)



>mm_chr12_121221498_121222216
          Length = 719

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagactagatttgacctcacagtagcttgtgttctcttacagtaaataatcttccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaagactagatttgacctcacagtagcttgtgttctcttacagtaaataatcttccttt 460

                                                                       
Query: 61  tattggaaatgtttaagggaagtacaaatggtcacttgttagggtatagaagagtatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tattggaaatgtttaagggaagtacaaatggtcacttgttagggtatagaagagtatgac 400

                                                                       
Query: 121 gggataattctgacatgaagttggaatagaatcctataagatatactgagctggaggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gggataattctgacatgaagttggaatagaatcctataagatatactgagctggaggctc 340

                                                                       
Query: 181 aattttcgaagaattagagttcagagatctacatgtggtattgtgcaatttattttagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aattttcgaagaattagagttcagagatctacatgtggtattgtgcaatttattttagat 280

                                                                       
Query: 241 gaaacagaagatattttatattcctgtaatagaaaaagttcctgttctaggaccttattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaaacagaagatattttatattcctgtaatagaaaaagttcctgttctaggaccttattg 220

                              
Query: 301 ttatgatcttaaattagtc 319
           |||||||||||||||||||
Sbjct: 219 ttatgatcttaaattagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)