Query= MSMg01no427_e20.b1 MSMg01no427_e20.b1 CHROMAT_FILE:
MSMg01no427_e20.b1 PHD_FILE: MSMg01no427_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:08 2005
(519 letters)
>mm_chr12_106455950_106456868
Length = 919
Score = 857 bits (443), Expect = 0.0
Identities = 503/527 (95%), Gaps = 10/527 (1%)
Strand = Plus / Minus
Query: 1 actcgcttgtccctctccttctccgccctcagtttagagacgtggaggacatgttgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 actcgcttgtccctctccttctccgccctcagtttagagacgtggaggacatgttgcttg 526
Query: 61 aactgatagactcggagtccaacgatgaataacccagacctggtgagcgcccctgagctc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 525 aactgatagactcggagtccaacgatgaataacccagacccggtgagcgcccctgagctc 466
Query: 121 catcagaaggaaggagggcccttctctatgaaagccatgacaacccctccccggcagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 catcagaaggaaggagggcccttctctatgaaagccatgacaacccctccccggcagcta 406
Query: 181 tcttcagaggctgcctagagtaggaaaagcttcttggacatgtccatgtctctcctttac 240
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 tcttcagaggcagcctagagtaggagaagcttcttggacatgtccatgtctctcctttac 346
Query: 241 caccttatgagccccagctacatccatgtctacagggcccctgaggtgacccattgttca 300
||||||| ||||||| ||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 345 caccttaggagccccggctacatccatgtctgcagggcccctgaggtgactcgttgttca 286
Query: 301 ccatcggttgtctaagagatgactgctgggccatctcaccaactcagctggggatccaca 360
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 285 ccatcggttgtctaagagatgactgctgggccatctcacgaactcagccggggatccaca 226
Query: 361 aataatactgaagcaggtttctccatttcttcttc----ttttttttcc-cagagatttt 415
|||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct: 225 gataatactgaagcaggtttctccatttcttcttcttttttttttttcctcagaga--tt 168
Query: 416 ttttttaattggatattttctttatttctc---cttttttttttttttaccccactctct 472
||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 167 tttttaaattggatattttctttatttctctctctttttttttttttcaccccactctct 108
Query: 473 tcacggtgttggtgtttggccctgacctaggcatgagatacgaggtt 519
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcacggtgtttgtgtttggccctgacctaggcatgagatacgaggtt 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_e20.g1 MSMg01no427_e20.g1 CHROMAT_FILE:
MSMg01no427_e20.g1 PHD_FILE: MSMg01no427_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:08 2005
(534 letters)
>mm_chr12_106274185_106275121
Length = 937
Score = 922 bits (477), Expect = 0.0
Identities = 518/537 (96%), Gaps = 10/537 (1%)
Strand = Plus / Plus
Query: 1 aataaaactttattcacaaaggcaggaagaggtttagcccaaagcctttgccctccccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaactttattcacaaaggcaggaagaggtttagcccaaagcctttgccctccccac 260
Query: 61 caggcctcgagggtcccacataagatacacgtgtaaggtgtctgtgacaccttgtggtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggcctcgagggtcccacataagatacacgtgtaaggtgtctgtgacaccttgtggtgg 320
Query: 121 gggagaacgacaagatgggaccctgttctgttaggaggctggatcagcaaatgtttcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagaacgacaagatgggaccctgttctgttaggaggctggatcagcaaatgtttcagc 380
Query: 181 gatccagggtaaaaa---tacactgtgcttagacaaactagatcctggtgtacttgaggt 237
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 381 gatccagggtaaaaaaaatacactgtgcgtagacaaactagatcctggtgtagttgaggt 440
Query: 238 ggctagataccttatacacgtttggtcaaaagtaagtggcagggagtaccagtggcccag 297
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctagataccagagacacgtttggtcaaaagtaagtggcagggagtaccagtggcccag 500
Query: 298 taaatactgtctgtgtatactgacatcagaggtgtgagtccgtcccgtggactgtacatg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatactgtctgtgtatactgacatcagaggtgtgagtccgtcccgtggactgtacatg 560
Query: 358 cgtgtgcagtgagcaggtagctgtcggtgggacaagctatgctgagggtcatgggttcag 417
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtgcagtgagcgggtagctgtcggtgggacaagctatgctgagggtcatgggttcag 620
Query: 418 aggctgactttagactttagaaactgaggtgctgtcctggatccaccacatgctaactct 477
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 aggctgactttaga-------aactgaggtgctgtcctggacccaccacatgctaactct 673
Query: 478 gtgcctgtgggtaacttacttaccctctcggtgccctaacttgatctgtgaaacagg 534
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 674 gtgcctgtgggtaacttacttaccctctcggtaccctaacttgatctgtgaaacagg 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 937
Length adjustment: 10
Effective length of query: 524
Effective length of database: 927
Effective search space: 485748
Effective search space used: 485748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
