BAC Information

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BAC

Clone NameMSMg01-428A09
Chromosome12 (Build37)
Map Location 76,718,676 - 76,718,935
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e
Downstream geneWdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428A09.T7 (MSMg01no428_a09.b1)MSMg01-428A09.TJ (MSMg01no428_a09.g1)
ACCAG521085AG521086
length753738
length of high quality
(start - end)
269 (51 - 319)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no428_a09.b1 PHD_FILE: MSMg01no428_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:04 2005CHROMAT_FILE: MSMg01no428_a09.g1 PHD_FILE: MSMg01no428_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTATTTCCCCCAAGTTAGTCTTGAACTTGCAACTCCCTG
ACTCAGCCTCCCAAGTGTGATTGTGCCCAACTACAGTCCACTTCCTAAAG
TTTTTTTTTTTTTATCACAATGTTAGCTTTCTGAGATTGTAATGAATGTC
TAAAGCAGCTCAGTTATAAAGAGAAAAAGGCTATTCTGCCCCACAAGTTT
AGAGGTTTCAGTCCATGGTCAAGGTGGCACTCCTGTTTGGGGACTATGTG
TTAGTAGAACCATCACGACATGTTGTTTTAGAAGAAAAGAGAGTTAGAAG
CGCTCTTGAGAGGCAGAGGCAGGCAGATCTCTGTGAGTTTAAGGTCAACC
TGGTCTACAAAGCGAGTTTTAGGACAGCCAAAGGCTACACAGAGAGACCC
TGTCTTAAAGACAAACAAACACAGAGAGAGAGACAGAGACAGAGATCCAG
GCACACGCACATATCATACACTCGCTCATCTCGATTGACCGATAGACAGA
CAGACCTACGGGTATCCCACAGTCCCTTTCTAGCTCTGCCTTTCCGTCTC
ATAAAATATTGCCCCCAAAACCTCTCTTTAATTAATCCCCCCATCCTTTG
AGCTGTTTTTTTACCCCCTCTAATCCCTGTTATTTCTGCCAACATTATTC
TAGCCCCCTTTTACCCGTACCTCCCTTTTTCTTTATCCCCCCTGTTTGTT
CCN
NCCATTGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTCAGCATCCATATTAAGT
GGCTCACCCACTGTCTATAACTCCAAACCCAGGGGATTTAGTGCCCTCTT
CAGGCCTCTGTGGGAGCACCCACGAGTGCATACACATACACAGACACCCA
CATCTACATACATGAATAAAAAATAAATCTTTAAAAATAAAAAATGCTGT
AGTTATTGTTGTTGCTGCTGCTGCTGTTGTTGGAGACAAGGTCTCACTAT
ATCTATAGCCCAGGGTGGTCTGTTAATCCACAGGCATCCAGTTGTCTCTA
CCTCCTAGGGTTGGAATTAAAGGCACACCACTACACCTTGCATTACTAAA
CTAAAATTTAAAACTAGATATGAAAAAGGGAGTTTTATAAGAGAAGAAAT
GGATACATCCCTACACATATACTTACCAAAATCTAATCAATTATTACCTG
ATCAATTTAATATCAAACCTATCTATCAATATGATATGATAAGTCATATC
AATTTATATCAGACCTATAGTAAACAATAAGACTGAAAAGTCTCCCATCC
GAGGAATGCTCAGGACCTGTTAAGCTCCCTGCTGCACTCCATCAGACTTT
GGTTATCTGTCATCAGTGTCCCTTGACACCCAGGTGGCTGAATAACAGCC
AAACATTCTGCGATGGTTTGTACATGCTTGGTCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_a09.b1 MSMg01no428_a09.b1 CHROMAT_FILE:
MSMg01no428_a09.b1 PHD_FILE: MSMg01no428_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:04 2005
         (269 letters)



>mm_chr12_76718467_76719135
          Length = 669

 Score =  441 bits (228), Expect = e-128
 Identities = 254/266 (95%), Gaps = 6/266 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatttcccccaagttagtcttgaacttgcaactccctgactcagcctccca 63
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattcactatgtagcccaagttagtcttgaacttgcaactccctgactcagcctccca 269

                                                                       
Query: 64  agtgtgattgtgcccaactacagtccacttcctaaagtttttttttttttatcacaatgt 123
           |||||||||||||||||||||||||||||||||||||      |||| ||||||||||||
Sbjct: 270 agtgtgattgtgcccaactacagtccacttcctaaag------ttttcttatcacaatgt 323

                                                                       
Query: 124 tagctttctgagattgtaatgaatgtctaaagcagctcagttataaagagaaaaaggcta 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 tagctttctgagattgtaatgaatgtctaaagcagctctgttataaagagaaaaaggcta 383

                                                                       
Query: 184 ttctgccccacaagtttagaggtttcagtccatggtcaaggtggcactcctgtttgggga 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 ttctgccccacaagtttagaggtttcaatccatggtcaaggtggcactcctgtttgggga 443

                                     
Query: 244 ctatgtgttagtagaaccatcacgac 269
           ||||||||||||||||||||||||||
Sbjct: 444 ctatgtgttagtagaaccatcacgac 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)