BAC Information

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BAC

Clone NameMSMg01-428D07
Chromosome12 (Build37)
Map Location 92,472,154 - 92,472,399
singlet/doubletsinglet
Overlap gene4930534B04Rik
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 5430427M07Rik
Downstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D07.T7 (MSMg01no428_d07.b1)MSMg01-428D07.TJ (MSMg01no428_d07.g1)
ACCAG521225AG521226
length759763
length of high quality
(start - end)
247 (74 - 320)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no428_d07.b1 PHD_FILE: MSMg01no428_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:19 2005CHROMAT_FILE: MSMg01no428_d07.g1 PHD_FILE: MSMg01no428_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGACAGAACCG
CGGAATTCAATAGAGGTCACAACATTACTTCCAGGCTGGCATGGTTGGAA
ACCTTGGGATCCAAGTTTCTTGACACAAAGAATGTTTTCCTTGATCAACA
TGCTGCCTCTTTGTTGAGGGGCTGCCTTTCACTGAGTGAGACACGGGTAA
CCCGATGAGATAATTCATGCTTTCACCATGACTATGCAGTAATGTGGTTT
CTATCTCTAAGCAATGCAAGAGGTTATTTGTTTCATAAAAAAAAACTGAA
ATAAGAATGCGACTACCACATTAATANGTTACAATTCCATTCTAATTACA
TATTAGAAAACTAACTGAACATTTAAGGCACGTAATGTGAGAAGTCATAA
TTACTTTCAGTTTCTCCAGCGAGTCTCTGGAGAAAGTCTTACAAGCTTCA
TCAATCTCTTTCCCTATTACACCACGAATGGATTCTTGCTCCGTCTCCAA
ACAGAGCAGCTGATCCTTGACACGCACTCTGGACTCTTCCATCCGCCTTA
TGTGCTCTTTCTCGCGTACTTATGCACTTCTCCTGCCGTATCAGGCGCTA
AACCGAGCCTTCTTACACTTCCCTCATTACCCCCCTATCTTTCTCCACTC
TCACCTTATATACTCGTTTTCTTAAACCCCATTGCTATTGGCTTCTCCCC
TTTACCTTTTTTTAATCACACCTTTCCCCCCTTTTTGTCCCTCTTTCTCT
TCCCCCGTT
NTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACCAAGCCCTCTATTTCTTCC
TCTGTAGGTGGGAACAATGAAACCTACCAGTAAGGGCTGATGTGAGGATT
AACTACACCACACACATAAACACACATACACATACATACACACACAGACA
CACATACATACACACATGTACATAATACACATACATACACACATACATAC
ATATACTCACACATACATACACGGACACAGACACATACACACACAGACAC
AAAAGACACCCACACAGAAGTTTATTTTTTATAAAAACACACATGCATAC
ACACACACACAAATGCTCAGAGAGAGTAAGAAAGCAAGAGCAAGCCAGCG
AGCAAGTGAGCAAGAAAGACACGCCCAAGGGGAAGGAGAGGGGGAGGTTT
CCCTTTTTCCCTCCCCTCTTCTTTTTCCCACTTCCTTCTCTCCCTTTTAC
CCCCCCCTTTCCCCCCCCTTTTCCCCTTTTCCTCACCCCTATCTTCCTCT
CCCTTTCTTCCCCCCCTCATTTTCCCTATTCTTTTCGTTCATCCCTTTCT
TTATTTATCTTCCCCCTTTTTTTTTCCCCTTTCCCTTTTCCACCTCCTGT
CTCACCCTTTTTCTTCTTTTTTTTTTTCTCCCTCTTCCTTTCTTCCCTCC
CCCCCCCTTTTTTTCTCCCTTTTTTTTTTTTCCACCCCCCTCTCACTTTT
TCATTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d07.b1 MSMg01no428_d07.b1 CHROMAT_FILE:
MSMg01no428_d07.b1 PHD_FILE: MSMg01no428_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:19 2005
         (247 letters)



>mm_chr12_92471953_92472599
          Length = 647

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttacttccaggctggcatggttggaaaccttgggatccaagtttcttgacacaaagaatg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttacttccaggctggcatggttggaaaccttgggatccaagtttcttgacacaaagaatg 261

                                                                       
Query: 62  ttttccttgatcaacatgctgcctctttgttgaggggctgcctttcactgagtgagacac 121
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttccttgatcaacctgctgcctctttgttgaggggctgcctttcactgagtgagacac 321

                                                                       
Query: 122 gggtaacccgatgagataattcatgctttcaccatgactatgcagtaatgtggtttctat 181
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| 
Sbjct: 322 gggtaacccgatgagataattcacgctttcaccatgactgtgcagtaatgtggtttctaa 381

                                                                       
Query: 182 ctctaagcaatgcaagaggttatttgtttcataaaaaaaaactgaaataagaatgcgact 241
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 382 ctctaagcaatgcaagaggttatttgtttcataaaaaaaatctgaaataagaatgtgact 441

                 
Query: 242 accaca 247
           ||||||
Sbjct: 442 accaca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)