Query= MSMg01no430_j07.b1 MSMg01no430_j07.b1 CHROMAT_FILE:
MSMg01no430_j07.b1 PHD_FILE: MSMg01no430_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:30 2005
(267 letters)
>mm_chr12_106269293_106269959
Length = 667
Score = 485 bits (251), Expect = e-142
Identities = 260/263 (98%)
Strand = Plus / Minus
Query: 5 gaattccggtgtttatcatgatggccccagggtagagtgcttgcttgcacatctgctggg 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattccggtgtagatgatgatggccccagggtagagtgcttgcttgcacatctgctggg 408
Query: 65 gatggtgcagaagagtgggcaggcgcgtcgtttttttacatggacttccccctagaacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatggtgcagaagagtgggcaggcgcgtcgtttttttacatggacttccccctagaacag 348
Query: 125 agccccgggtgtggtcagttctcccgccggtagtacgcagatccagatcctggccagcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agccccgggtgtggtcagttctcccgccggtagtacgcagatccagatcctggccagcag 288
Query: 185 gcctccgcagcccactatctaatctgcagtcttggccctgcgctgggttagcggtaccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gcctccgcagcccactatctaatctgcagtcttggccctgcgctgggttagcggtaccct 228
Query: 245 agagcacaccagacttgcagaga 267
|||||||||||||||||||||||
Sbjct: 227 agagcacaccagacttgcagaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space: 169764
Effective search space used: 169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no430_j07.g1 MSMg01no430_j07.g1 CHROMAT_FILE:
MSMg01no430_j07.g1 PHD_FILE: MSMg01no430_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:30 2005
(369 letters)
>mm_chr12_106107857_106108631
Length = 775
Score = 648 bits (335), Expect = 0.0
Identities = 366/383 (95%), Gaps = 14/383 (3%)
Strand = Plus / Plus
Query: 1 cagagactgacagaaggactaagagtttgaggccagctttggctgcatagcaacatatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagactgacagaaggactaagagtttgaggccagctttggctgcatagcaacatatgg 260
Query: 61 caatcaagacatgtttgcttggctctcatggcaaagcataccccgtggagaagcaggcac 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatcaagacatgtttgcttagctctcatggcaaagcataccccgtggagaagcaggcac 320
Query: 121 cagtgccaagagaggggattccttcctcaggcatgtccagcctgaacattggcacaaaca 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cagtgccaagagaggggattccttcctcaggcacgtccagcctgaacattggcacaaaca 380
Query: 181 tttaaaaaaaaaa------acaataaaactttacaaattttaaatggaaaaatctcaaag 234
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaaaaaaaaacaaaaaacaataaaactttacaaattttaaatggaaaaatctcaaag 440
Query: 235 ttagcagatcgcaaaaaaaaaaaaaaac------caa-aacaacaacaa-caaacaaaca 286
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 441 ttagcagatcgcaaaaaaaaaaaaaaaaaaaaaacaacaacaacaacaaacaaacaaaca 500
Query: 287 gaaaacaagacatttcctagccaggggtctgcaatatgatgtcaccaggctgcactgtgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaacaagacatttcctagccaggggtctgcaatatgatgtcaccaggctgcactgtgc 560
Query: 347 catgaatacccctggcttcattc 369
|||||||||||||||||||||||
Sbjct: 561 catgaatacccctggcttcattc 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 775
Length adjustment: 9
Effective length of query: 360
Effective length of database: 766
Effective search space: 275760
Effective search space used: 275760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
