BAC Information

Click to search

BAC

Clone NameMSMg01-431H04
Chromosome12 (Build37)
Map Location 33,538,742 - 33,539,025
singlet/doubletsinglet
Overlap genenone
Upstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1
Downstream geneLOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431H04.T7 (MSMg01no431_h04.b1)MSMg01-431H04.TJ (MSMg01no431_h04.g1)
ACCAG523704AG523705
length760768
length of high quality
(start - end)
460 (42 - 501)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no431_h04.b1 PHD_FILE: MSMg01no431_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:45 2005CHROMAT_FILE: MSMg01no431_h04.g1 PHD_FILE: MSMg01no431_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGCCCTTACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGC
CAACTTCTCTCCATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACA
TAGTACTTGAAGTATTAGCCAGAGCAATTCGACAAGAAAAGGAGATCAAG
GGGATACAAATTGGAAAAGAGGAAGTCAAAACATCACTTTTTGCAGATGA
TATGATAGTATATATAAGTGACCCTAAAAATTCTAACAGAGAACTCCTAA
ACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAAC
AAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAAC
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTG
GAGGGATTCTAACTAAGGAGGTGACAGATCTGTATGATATCACCCTCCTA
TCCCCCCAGAAAGAAATTAATGAACATCTCACAACACGTAAATAGCTCCC
ATGGCTCATGCATTTGGGAGGATTTTCATCGGTCATTATGGTTTTCTTTG
CTTCCCGTAAATCTTCGGACTTATTGGACCCTCTCCTTCATAATTTCTCT
TCCCGCTTTCTAATACTTTATAACGCGCGCCTATCCGTCTGTTTCGCCTT
GCGCATTTTC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGAGATTTAATCTTTAGATGGCTGCTTTC
CCCAGTTCAGGTGAATCCTGAAGCCTTATGAAAAACAAGGTATGGATTTT
CAAGGCAGGACCTATGTGTCCCAAGCTGTCCCACTTGGTGACTCTACCTC
AGCCTTTACTAAGACACTTTCACAGACACACACACAGTGTACTTGAGATC
CTGTTTAGCCGTTACTATCCTCCTCCTGTTGGTCTAGGGAAAGTACCGAC
TTCCTCTCTTTAATTGATGCTCATCAGTATCCTTTGCTACCTTATGTTCT
GCACGCAACCTCCAAGATTTCATCTCGTGGGCCCTTCTTTATTGGTTTGA
TATTCCTTCTCTAGAAATGAAAAGTACTGTCCTATGTTCCCTTTTGTATG
CTCTTCTGTTACTTTTTGTATATAATGGCTACTCTCCCCTCCCAGATTGC
TCCATTTCTTATGCCTACCTCCCCTTCTTCCTCTTTTTTATTTCTTTTAC
CCCTTTTTTTTCCCCTCCTTCCTCCCTCCTTACTTTCTCTCCCTTTTTCA
CCTCTCTCTATCTTCATCCTTTCTCCCTTATTCTTCCCCTTTTCTCCTAT
CCCCTTTTCCTCCTTTTCTCCCCTTTTCCCTTTTTTTTCCCCTCCGCCCT
CTTTCTCTTCTCTTATCCCTTTTCCTTCCTCTCTCTTTCTTCTCTTTTTA
TCTTTCCTTCTCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_h04.g1 MSMg01no431_h04.g1 CHROMAT_FILE:
MSMg01no431_h04.g1 PHD_FILE: MSMg01no431_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:45 2005
         (286 letters)



>mm_chr12_33538542_33539225
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 281/286 (98%), Gaps = 2/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagatttaatctttagatggctgctttccccagttcaggtgaatcctgaagccttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attgagatttaatctttagatggctgctttccccagttcaggtgaatcctgaagccttat 425

                                                                       
Query: 61  gaaaaacaaggtatggattttcaaggcaggacctatgtgtcccaagctgtcccacttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaaaaacaaggtatggattttcaaggcaggacctatgtgtcccaagctgtcccacttggt 365

                                                                       
Query: 121 gactctacctcagcctttactaagacactttcacagacacacacacagtgtacttgagat 180
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 364 gactctacctcagcctttactaagacactttcacag--acacacacagtgtacttgagat 307

                                                                       
Query: 181 cctgtttagccgttactatcctcctcctgttggtctagggaaagtaccgacttcctctct 240
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cccgttcagccgttactatcctcctcctgttggtctagggaaagtaccgacttcctctct 247

                                                         
Query: 241 ttaattgatgctcatcagtatcctttgctaccttatgttctgcacg 286
           ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttagttgatgctcatcagtatcctttgctaccttatgttctgcacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space:   186975
Effective search space used:   186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)