BAC Information

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BAC

Clone NameMSMg01-432J10
Chromosome12 (Build37)
Map Location 10,621,571 - 10,621,751
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432J10.T7 (MSMg01no432_j10.b1)MSMg01-432J10.TJ (MSMg01no432_j10.g1)
ACCAG524571AG524572
length795771
length of high quality
(start - end)
278 (38 - 315)466 (75 - 540)
definitionCHROMAT_FILE: MSMg01no432_j10.b1 PHD_FILE: MSMg01no432_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:22 2005CHROMAT_FILE: MSMg01no432_j10.g1 PHD_FILE: MSMg01no432_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACACCGCGGAATTCTCTGT
GTATTCCTGTTCCCCATTTTAATAGTGTTATTTGGTTCTCTGGAGTCTAC
CTTCTTGAGTTCTCTATGTATATTGGATATTAGCCCTCCATCACATGTAG
GGTGGCTAAAGATCTTTTCCCCATATGTTGGTTGCTGTTTTGTTAATGCT
GAGAAAGCATTTGACAAAATTCAACACCCCTTCATGATTGGAAAGATTAT
GAATTTAAGGCCCATACCTAAACATAGTAAAAGCAATATACAGCAAATTG
TAGCCAACATCAAACTTATTGTTGATGAAGTTGAAGCAATACCACTAAAA
TCAGGGACTAGACAAGGCAGTCCACTCTCTCCCTACCTATTCAATGTAGT
ACTTCAAGCCCTACCTAGAGCAATTAGACAACAAAAGGAGGTCAAATGAT
ACAAATTGGAAAGAAAGAAGTCAAACTATCTCTATTTGCAGATGATATGG
TCATATACTTAAGTGACTCCAAAATTCCACCAGAGAACTCCTAAACCTGA
TAACCACTCCCCACAAGTGGTTGAATGAAAATTAACTCTACCCAAATACA
AACCCTTCTTCTACTGAATGGGTAAATGACCTTAAAATAAACTGTTTTTA
AAATCTGAAAACATATTTTTTTGTTAAATAAATACCTTCCCCGGCCCCAA
TGTATTCTCTTCCTATTCCCCCCTTTTTCTTCCTCCTTCTATCAGTACTG
TTTTTTGTTTTTACCTTCTACTTCTTTTTCTTTCCCTCTACACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGTTCCAACTTCTGCTTCTTTAAA
ACAGGAACTAAACACAAACCAAAAGCACATTTCCGTCTAAGTTTACACAG
TCTGTTACTCACAGGTAACCTGTTACTCATGGGTAATCTGTTACAGGTAA
CCTGTTACTCATGGTTAGCTGGACACAGCTCTTCTTGTTTCTAGGAACAG
CAGACTGTAGTCTCCCCTCCCCCAGCCTGAAACCTGCTTGCTCGGGGTGG
AGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCTGGAACCTGAGGAGC
CACACACGTGCACCTTTCTACTGAACCCGAGATTATTCGGCGGGAATCTG
GTCCCCTCCCCCTTCCTTCATAACTAGTGTCTCAACAATAAAATTTGAGC
TTTGATCAGAATGAATTTGTCTTAGCTCCGTTTCTTTTTTCGCCCCGTCT
AGATTCCTCTCTTACAGCTCGAGTAGCCTTCTCAGTCGAAACGTTCACGT
TGCGAGCTGCTGGCGGCCGCAACATTTTGGGCCCGAATGGGAACCTGAAT
AAAGGCAAAAAGATGCTAAAAAGAAAGCTGCTCTTGGACCTCTCCGGAAA
AGATTTTTGTTTTCGACTTCTTAACATCCGATATGGACATTGTTACTCCC
TGTTTAAATATCTTCCTTGTAAAGTGTGCTACAGTAGGGTAATAACAATA
TTAATCTTATACTTTACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_j10.g1 MSMg01no432_j10.g1 CHROMAT_FILE:
MSMg01no432_j10.g1 PHD_FILE: MSMg01no432_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:22 2005
         (466 letters)



>mm_chr12_10621371_10622236
          Length = 866

 Score =  304 bits (157), Expect = 1e-86
 Identities = 175/181 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagttccaacttctgcttctttaaaacaggaactaaacacaaaccaaaagcacatttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ttagttccaacttctgcttctttaaaacaggaactaaacacaaaccaaaagcacatttcg 260

                                                                       
Query: 61  gtctaagtttacacagtctgttactcacaggtaacctgttactcatgggtaatctgttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctaagtttacacagtctgttactcacaggtaacctgttactcatgggtaatctgttac 320

                                                                       
Query: 121 aggtaacctgttactcatggttagctggacacagctcttcttgtttctaggaacagcaga 180
           |||||||||| ||||||||| |||||||||||||||||||| |||||  |||||||||||
Sbjct: 321 aggtaacctggtactcatgggtagctggacacagctcttctggtttccgggaacagcaga 380

            
Query: 181 c 181
           |
Sbjct: 381 c 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)