BAC Information

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BAC

Clone NameMSMg01-432K06
Chromosome12 (Build37)
Map Location 6,760,032 - 6,760,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432K06.T7 (MSMg01no432_k06.b1)MSMg01-432K06.TJ (MSMg01no432_k06.g1)
ACCAG524610AG524611
length803814
length of high quality
(start - end)
377 (35 - 411)367 (69 - 435)
definitionCHROMAT_FILE: MSMg01no432_k06.b1 PHD_FILE: MSMg01no432_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:26 2005CHROMAT_FILE: MSMg01no432_k06.g1 PHD_FILE: MSMg01no432_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTCAC
CTGAGGAACACCGAATGGCAGAGAAACACCTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGA
CATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTACTTATAAGAGCCAGAAGCTGGAAAGAACCTATATGCCCCTCAAC
AGAGGAATGGATACTGAACATGTGGTACATCTACACTATGGAGCACTATT
CAGCTTTTATAAAGAACGTATTTTTTACTATTCCTTACCCCCTTGCATGG
TACTGCAGGTCCCCCTCTTTGAGTGACGTTATTCCTTTCCCTACTCTTTT
CTCCTTTTATGCACTTCCCTTATATTTGTATTTTTTTTCCATTTCTCTCT
CCTCCCCCTCCACTTCTTTCTTCTGCTTTTTCCCTTCCCTTCGTCCCTTT
TCTCCTTTTTTCTTTACTTTCTTGTTCTTCCCTTTTCTTTTCCTTCTCCT
TTTCTGTTTTTTCTCCTTCTTTTCTTCTTATCCCCGTATTTATCTCCCTT
TTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTAAGATAAAAGGAGCCATAGATGGCAGGAT
ATAATAAAGAGTGGTTGATGCCTGGGAAATTCTACTGACCTGGTATTCAG
TGTAATTGAATATGATTATGCTTATCACTTAATTTCAGAGTATTCACTTT
GTGCTTTATTTCTATTAGTTATCATCAAACCTTTAGATGTTGTATATTAC
AAATAGTGGAATTTTACCTATTTCCTTTAGGTAATGAAAGAAGAATGTCT
CTACCTGAAGTAGTAGTGGACATTCACAGGGCTTATATATTGAAGGCTTA
CTATCTCAGAAAAAGATTTCCCTATCCCCATGTATCAAGAAGAAGGCTGG
ATTTTTCTATATTCTTGGTTTTTTTTTTTTTTGATTTTTTTTTTTATGGN
NTATCTCCCTTTTTTCATTTCTTTATTTTTCCCCATTTTTATTTTTCTTT
CTCTCCCTCCTCTTTTTCCATCTCTTTTTTTTATCCTTCTTTCCTTCCTT
TTACTCTTTTCCTTTCTTCTGTTGTTCGTCTTGTCCTATTCTTATCTCGT
TCCTCCTATTATTTGTTATCCGTTTTCTGTAGTCCTTTACCTACACGAGT
CTTTCTTTTCTTCCTTTCCTCCTTTACATTACTTCTCCTCGCCTTTTTGT
TGCCCTCTTTCTCTTGATGTTCCATCGTTTCATTTTTCCTTCCTTCTATT
TTGCCCTTTCTATCTTCTTCTCTTCCTTCATCCTTTCATTTGTCTCTTCC
TTTCCTTACTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_k06.g1 MSMg01no432_k06.g1 CHROMAT_FILE:
MSMg01no432_k06.g1 PHD_FILE: MSMg01no432_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:26 2005
         (367 letters)



>mm_chr12_6759832_6760598
          Length = 767

 Score =  690 bits (357), Expect = 0.0
 Identities = 363/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaagataaaaggagccatagatggcaggatataataaagagtggttgatgcctgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaagataaaaggagccatagatggcaggatataataaagagtggttgatgcctgggaa 260

                                                                       
Query: 61  attctactgacctggtattcagtgtaattgaatatgattatgcttatcacttaatttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctactgacctggtattcagtgtaattgaatatgattatgcttatcacttaatttcag 320

                                                                       
Query: 121 agtattcactttgtgctttatttctattagttatcatcaaacctttagatgttgtatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtattcactttgtgctttatttctattagttatcatcaaacctttagatgttgtatatt 380

                                                                       
Query: 181 acaaatagtggaattttacctatttcctttaggtaatgaaagaagaatgtctctacctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaatagtggaattttacctatttcctttaggtaatgaaagaagaatgtctctacctga 440

                                                                       
Query: 241 agtagtagtggacattcacagggcttatatattgaaggcttactatctcagaaaaagatt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 agtagtagtggacattcacagggcttatatattgaaggtttactatctcagaaaaagatt 500

                                                                       
Query: 301 tccctatccccatgtatcaagaagaaggctggatttttctatattcttggtttttttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tccctatccccatgtatcaagaagaaggctggatttttctatattcttgttttttttttt 560

                
Query: 361 ttttg 365
           |||||
Sbjct: 561 ttttg 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)