BAC Information

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BAC

Clone NameMSMg01-432M12
Chromosome12 (Build37)
Map Location 30,014,394 - 30,014,882
singlet/doubletsinglet
Overlap genenone
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M12.T7 (MSMg01no432_m12.b1)MSMg01-432M12.TJ (MSMg01no432_m12.g1)
ACCAG524718AG524719
length570778
length of high quality
(start - end)
---489 (72 - 560)
definitionCHROMAT_FILE: MSMg01no432_m12.b1 PHD_FILE: MSMg01no432_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:38 2005CHROMAT_FILE: MSMg01no432_m12.g1 PHD_FILE: MSMg01no432_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATACCGTTATCCTTATCCACAACAATATCCCATCTAGAGCNTNGGTATC
TCTNNAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAG
AACCGCGGAATTCTTTGCCTTCCGCTACATCCAAGAGTGGATGNGTATGT
ATGGCTCCCAGATGGCAGGGAACCAAATGTATTCAGAAGTGACTGTCCCT
TGAACAGTTTCTGGAGACTCCTAGGCCAATCCCCGAACAAACATTAAGAA
ATAAATCCCAAGGGGGGGCAACAGGGCCCCACAGGGGGGCAAATCCCCCA
CCCCCGGCAAAAAAAAGGGGAAAACGGGGGAAGCTTTCCAAACCTGGGCT
AAAGGGAATAAAAAGAAAACTTTTATCCCCTCGTGGGGCCCCAAGGGGGG
AAAATTGTGGGACCCCAAAAGGGGGGCCCCACGGGGGGGGGAAAAAAAAA
AAAATTTCTCCCCGCGGGGGTGGGGGGGAAAAGCCCCAACACTTTTTTTT
TTTTGCTAAAAAAAAAGGGGGCCCCCCCCCCCCGAAATTGTGGGTATAAA
AACTCCCTGGGGGGGGAAAA
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAAACTGGAACCCCAGTGCTGCTTGTGT
TTGGGCTGCCCCAAGTGTCCTGCTTAATGTGTGCCTGCTCTTTGCTCTCT
CTTCATCCCGGACAGTAAAGAGATGGCAGAGTACAGGAATCAGTAAATTC
CCTACCAGGCTCTATCTGATTCCTTTTTTTCCCCTAGTCCATGTGAGAAC
AGAAAAACTGTAGAGAATATAGCGAGAGGGAGAAAGAATTGGCCATTCAA
AAGTGATGCTAAATGGAAGGCAGTCAGAATGGCTTTGTGTGCTGACCCTG
GAATGGTGCCCCCTGATTTGACTAACCCTAATCTTGGGCATGAGTTGGAA
CAATATGGATCCAGAGAACCTCACCTGACTGTACATGGTGCCCCTGGGGG
AATGAAAAGCCCTGTGGGACACTGGGCTCCTCTGGCTGCTCTTCTCTGGC
ACAGAACCCCCTAGAATGCCCTGGTGATTTCACTAGTGAGGCACATAGGT
GGGACTGAACGAACTTCCCTAAGTCCATGGCTGTGCAGCTGAAGATGGTG
GAGTAAGGTCTCCAAGTGAAGCATCCTCTTGAGGGCACTGCCACTGGTGG
TCCTGTCTGTTGAGCAGTTTTCACCTGATACCTCCAGGGCTCTTGTTTGC
CCTTGTTTTTTTGTGAAAGTCTATACTTCTCGTCTGAAAACTCGCTAATC
ATTTATCCATCCCTTCTTTCTTCTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m12.g1 MSMg01no432_m12.g1 CHROMAT_FILE:
MSMg01no432_m12.g1 PHD_FILE: MSMg01no432_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:38 2005
         (489 letters)



>mm_chr12_30014194_30015082
          Length = 889

 Score =  946 bits (489), Expect = 0.0
 Identities = 489/489 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaactggaaccccagtgctgcttgtgtttgggctgccccaagtgtcctgcttaatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaactggaaccccagtgctgcttgtgtttgggctgccccaagtgtcctgcttaatgtg 260

                                                                       
Query: 61  tgcctgctctttgctctctcttcatcccggacagtaaagagatggcagagtacaggaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctgctctttgctctctcttcatcccggacagtaaagagatggcagagtacaggaatc 320

                                                                       
Query: 121 agtaaattccctaccaggctctatctgattcctttttttcccctagtccatgtgagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaattccctaccaggctctatctgattcctttttttcccctagtccatgtgagaaca 380

                                                                       
Query: 181 gaaaaactgtagagaatatagcgagagggagaaagaattggccattcaaaagtgatgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaactgtagagaatatagcgagagggagaaagaattggccattcaaaagtgatgcta 440

                                                                       
Query: 241 aatggaaggcagtcagaatggctttgtgtgctgaccctggaatggtgccccctgatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggaaggcagtcagaatggctttgtgtgctgaccctggaatggtgccccctgatttga 500

                                                                       
Query: 301 ctaaccctaatcttgggcatgagttggaacaatatggatccagagaacctcacctgactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaccctaatcttgggcatgagttggaacaatatggatccagagaacctcacctgactg 560

                                                                       
Query: 361 tacatggtgcccctgggggaatgaaaagccctgtgggacactgggctcctctggctgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatggtgcccctgggggaatgaaaagccctgtgggacactgggctcctctggctgctc 620

                                                                       
Query: 421 ttctctggcacagaaccccctagaatgccctggtgatttcactagtgaggcacataggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctctggcacagaaccccctagaatgccctggtgatttcactagtgaggcacataggtg 680

                    
Query: 481 ggactgaac 489
           |||||||||
Sbjct: 681 ggactgaac 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)