BAC Information

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BAC

Clone NameMSMg01-432N07
Chromosome12 (Build37)
Map Location 81,444,550 - 81,444,886
singlet/doubletsinglet
Overlap geneWdr22
Upstream geneRad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1
Downstream geneExdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432N07.T7 (MSMg01no432_n07.b1)MSMg01-432N07.TJ (MSMg01no432_n07.g1)
ACCAG524756AG524757
length880833
length of high quality
(start - end)
93 (64 - 156)337 (68 - 404)
definitionCHROMAT_FILE: MSMg01no432_n07.b1 PHD_FILE: MSMg01no432_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:42 2005CHROMAT_FILE: MSMg01no432_n07.g1 PHD_FILE: MSMg01no432_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCAAACGACTCACATTTTCTGACCCCCGCGGAATTCTCAGTT
TTTCCTAAATACCAGCGCTGGGAATGATGCTGAGGCAGGAGGATGGGGAG
TTTGAGGCCAGCTTTAGTACTGAGTATTGAGACCCTGGTGTCATTTTTTT
GTTTGTTTCAGGATGGGCTGTTTACACTCCTCCTCCCTTTCCTTCCTTCG
CTTGCCTCCTTTTTCTATCCCTACCTTGTTTCTTTTCCTCTGCCTCTTTT
TTTTCCTCTTCCCCTCTTTTCCCGTTTCTTCTCCTCCTTTCCCCAGTCCC
CCTGACCTCCACCCTTTTTTTTTCTCGCCCGCTCTTTCTCCCTCCTTTCC
CCCTCTTTTTCTCCCTCCCTCTTCCACCTACTCCTGTCCTTCCTTGTCTC
TCTTCTTCCTTCCCCCCCCCCCCTCCATTTACTCTTCGTATTTTCGCTCT
CCTTCCTCCTTCTCTTCTCCTTGCTCCCTCTCTTCTCTCCTTTTCCCCCC
CCTCCTTCCTCTTTCCCTTCCTCCCTTTGTCCTTACTCTTCCCCCCCTTT
TCCCCCTTCTCCCTTCCTCCTCTCTTTCTCTCTCTTCTCCCCCTTACTCC
CTCTCTCTTTCCTTCTCTTCGTCTTCCCTCCTTTCCTTCCTCCCCATCTT
CCCTTCCTTCCCTTTTTCCCTCTCCTCGCTTTTCTGTTTCTTCCTCCCCT
TTCTTTTCCATCTCTTCTTCTTCGCTCTCTCTCTTCTCCACCCTCCTCTT
TCTTACCCCCCCCCATTCTCCTCTTCTTTTTACCTCCTTCCTCTCTCCCC
GCCTTATCCTCCTCCACTTCACCCCCTTTTACCCTTATTCCCTCCCCTCT
CCTTCCTCCTACCCCCTTCGCTCCTTCCCN
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATGTCTTCTGACCTCTGTAGGCACCAGGCATG
CATGTGGTGCACAGACATATGCATGTAAAATGCTCATACACAAAACAATA
AATGCTAAAAGTTTAAATTTAAAGACAGGCTAAGTGAATGTAGGATTCAT
GAAGGAACCCTGAGAACAGCAGTGGGAGGAGCTCCAAGTGGGCATGCCCA
CTGCTCTTGAAGTCTCAGTTCAAAGTCAAGCTCAGATAGTAACCTCTATT
GAGATGATAAAAATTCTTCTTTCTAAAGTGCTTTGTTAACTGGGCAAATA
CCTCTAATTCCAGCACTTGGGAGGCAGAGATAGTTTGAGGCTAATCTGGT
CTACAGAATGAGCTCCTGGAAAGTCATGTACTGAGAGAAAACCCTTGTCT
TTGATAATAAGCCAGTCAGCTTGCAATCTATCTAAAATTTGTCTCCCCTG
TCTTGGGTAACCCTTTCAACTTTATTCTTTCCCTTTCCCCTACCGAGTCA
TTTAATTCCTAAATAATACCTTGTGTTAACCTTTTACTCTTTTCGCCTTC
CTACACTTTCTTTTCACATTACTTTTATTTATTCTTTTTCAATTCTTCCC
TAAACACTCTCTTCATTAATATTTCCCTCCTTCCCTCTCTCTTTTTCGAA
AATATTACCTAATCTCCCTATATTTTTTTCTTTTTTTTCCCTTTCTATCC
ACATTTTATATTCCACCTCCTCTCTTATTCTCCCTTTACTATTCTTTACA
TTTACATCACTTTCTCCTTTCTTAATATATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_n07.g1 MSMg01no432_n07.g1 CHROMAT_FILE:
MSMg01no432_n07.g1 PHD_FILE: MSMg01no432_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:43 2005
         (337 letters)



>mm_chr12_81444350_81445086
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtcttctgacctctgtaggcaccaggcatgcatgtggtgcacagacatatgcatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtcttctgacctctgtaggcaccaggcatgcatgtggtgcacagacatatgcatgta 260

                                                                       
Query: 61  aaatgctcatacacaaaacaataaatgctaaaagtttaaatttaaagacaggctaagtga 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgctcatacacaaaataataaatgctaaaagtttaaatttaaagacaggctaagtga 320

                                                                       
Query: 121 atgtaggattcatgaaggaaccctgagaacagcagtgggaggagctccaagtgggcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaggattcatgaaggaaccctgagaacagcagtgggaggagctccaagtgggcatgc 380

                                                                       
Query: 181 ccactgctcttgaagtctcagttcaaagtcaagctcagatagtaacctctattgagatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactgctcttgaagtctcagttcaaagtcaagctcagatagtaacctctattgagatga 440

                                                                       
Query: 241 taaaaattcttctttctaaagtgctttgttaactgggcaaatacctctaattccagcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaattcttctttctaaagtgctttgttaactgggcaaatacctctaattccagcact 500

                                                
Query: 301 tgggaggcagagatagtttgaggctaatctggtctac 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaggcagagatagtttgaggctaatctggtctac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)