BAC Information

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BAC

Clone NameMSMg01-433H08
Chromosome12 (Build37)
Map Location 66,545,751 - 66,546,036
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433H08.T7 (MSMg01no433_h08.b1)MSMg01-433H08.TJ (MSMg01no433_h08.g1)
ACCAG525236AG525237
length754749
length of high quality
(start - end)
170 (68 - 237)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no433_h08.b1 PHD_FILE: MSMg01no433_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:33 2005CHROMAT_FILE: MSMg01no433_h08.g1 PHD_FILE: MSMg01no433_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGGATCCGCGGAATTCAG
TTATAACGTTATCTATTCATTCAAATTTAGTTCTAAAAGAGATGGTGAAA
CTAATTATGCATGACAAAGAACAGAGCCGGACTATCTCTGGGCTGGGCTG
CATAGTGTTTTCTTGGGACAATAGCCAGTCTTTCCCAGACAGGGGAATTC
ACAATGGCCTAATGAATAGGTGGGTTTACCATGAAAGAGTTATTGAATCC
CCCTGAGACAGGTTTCTTCACTTAGGCCCAAAGAAACAGCATCATCAGGC
ATTTACTTCTTTTCTTGGTGGTGGGCTTAACTATAGACTAGCATTACTCC
GCTCCTTTCCTAGTGGTAGTGGCCTGATCCCCACCTTCTTTTGGTGTATA
CATTCCCTTCGCCCTGTGTCACTGTCACCCACAGATGTATCCCACCTGCT
TTCTTGCTGCTCTTTTGCATACAAAGTATGATGCTCGCCTTCGACCCCCT
TTTTTTCCATCTCCACCCTCTCTCCCCGTGTCCCTCCCCACTTTGTCATT
CCTACTTCCTACTCTCCGCTCCCACTGTCCCTTTTAACTTCTTTCTCCTT
CCTATCTTTTTTTTCTCACACCTTCTTTTGCTTCTTCTTCTCCTTCCTTT
TCTTCTTTATCTTTCATCCCCCGCCTCCCCTCTCCATTTTCTTCTTTCTT
TCTCCTCTCACCACCATTCTTCTTTTTTTTCTCCTCTCCTCCCTCCTCCT
TTCN
CATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATGTCCTAAGGCTAAGATCAGACTACA
CCACAGGTGTTATTTTCAACTTAATTTCATAAAGAACATATGAACAGCCC
ATTTTTCTTTTATTATTTTATTTCTTTAATGGCAGTAATATAAATATATT
CTCATATAGAGAAAAAATAAAATAGAGTCTAATATTTAAAATATTTTGCT
TGGTATAATAAAAATCACTAATTATATGTCACTTATCAGCAGTATTTTTA
ATTCCTAAACCTCTCATTTCCCTGTGTTGGAACAATATTAAGTAATGGTC
CCTCCAAATGTGCTTGTTAAAGATGTTTATAGGTATGCCCGATACTCATA
GCAATACTCCGTAAGAACGATAACCCTGCCATATTTCTCATATTTAGCAC
TCTCTAAATACTGATACTTCTTCGGTATCCCCATTTGTAAATGCCCCTTA
CGAGTTTATTTTGTTGACTTTCTGCTTACCCTTTTCCCGTTCTTTTCCCT
TGTCTTTTACCTATGCTTCCCCTTGTCCACTCCTCTTTTGTTTGTTTTCT
CCCCTGCTCTCTTCCTCTTCTCCATCCTCTTTCTTTCCCTCTCCCCTTCC
TTCTCTCTCCTTCTTTCTCCTCTTTTTCCCCTCCTTTCCCCTCTTCCGAT
TCCTCCCTTTTCTTTTTCGCTTTCTCTTCCTCTTTTACTTTTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_h08.g1 MSMg01no433_h08.g1 CHROMAT_FILE:
MSMg01no433_h08.g1 PHD_FILE: MSMg01no433_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:33 2005
         (286 letters)



>mm_chr12_66545551_66546236
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgtcctaaggctaagatcagactacaccacaggtgttattttcaacttaatttcata 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aaatgtcctaaggctaagatcagactacaccacagatgttattttcaacttaatttcata 260

                                                                       
Query: 61  aagaacatatgaacagcccatttttcttttattattttatttctttaatggcagtaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aagaacatatgaacagcccatttttcttttattattttatttctttaatggtagtaatat 320

                                                                       
Query: 121 aaatatattctcatatagagaaaaaataaaatagagtctaatatttaaaatattttgctt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatatcctcatatagagaaaaaataaaatagagtctaatatttaaaatattttgctt 380

                                                                       
Query: 181 ggtataataaaaatcactaattatatgtcacttatcagcagtatttttaattcctaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtataataaaaatcactaattatatgtcacttatcagcagtatttttaattcctaaacc 440

                                                         
Query: 241 tctcatttccctgtgttggaacaatattaagtaatggtccctccaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatttccctgtgttggaacaatattaagtaatggtccctccaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)