Query= MSMg01no433_o01.b1 MSMg01no433_o01.b1 CHROMAT_FILE:
MSMg01no433_o01.b1 PHD_FILE: MSMg01no433_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:06 2005
(495 letters)
>mm_chr12_52644149_52645043
Length = 895
Score = 922 bits (477), Expect = 0.0
Identities = 488/493 (98%), Gaps = 4/493 (0%)
Strand = Plus / Plus
Query: 5 gaattctgcaga--tcccatgaaataaggaaaaagatcctcacactgcctgtgcttggca 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagaaata--atgaaataaggaaaaagatcctcacactgcctgtgcttggca 262
Query: 63 aaccctttctgtctggatgtcccccatgttgcagttggagctgtcaagagaagaaactgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaccctttctgtctggatgtcccccatgttgcagttggagctgtcaagagaagaaactgg 322
Query: 123 aggtcagcttttctgtcagcaaccatgtgagagggcctgtgagggccctagaaaacaagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggtcagcttttctgtcagcaaccatgtgagagggcctgtgagggccctagaaaacaagc 382
Query: 183 tgctgctcagagcacacgcgcatcatctgaatgtgtcacactgtcccccagaggcgacat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgctgctcagagcacacgcgcatcatctgaatgtgtcacactgtcccccagaggcgacat 442
Query: 243 acatgcataccgtgtgccttcttcaagctcctcctcatttgtccagtgtcagcaaatttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acatgcataccgtgtgccttcttcaagctcctcctcatttgtccagtgtcagcaaatttt 502
Query: 303 atgtagcagtcagggtttgacagagcatcagttctggtgtttacttcctctgcatcctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgtagcagtcagggtttgacagagcatcagttctggtgtttacttcctctgcatcctct 562
Query: 363 gagggtgtcaaagaacagctcttgcgctgactctcacaagtctttcaaaaatgcctttcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagggtgtcaaagaacagctcttgcgctgactctcacaagtctttcaaaaatgcctttcc 622
Query: 423 atctgagcctctgtcaccaacatcctgtaagaactgaccacgagggtttagttgtgcgag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atctgagcctctgtcaccaacatcctgtaagaactgaccacgagggtttagttgtgcgag 682
Query: 483 caaggacaggaag 495
|||||||||||||
Sbjct: 683 caaggacaggaag 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_o01.g1 MSMg01no433_o01.g1 CHROMAT_FILE:
MSMg01no433_o01.g1 PHD_FILE: MSMg01no433_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:06 2005
(482 letters)
>mm_chr12_52838995_52839876
Length = 882
Score = 841 bits (435), Expect = 0.0
Identities = 473/489 (96%), Gaps = 12/489 (2%)
Strand = Plus / Minus
Query: 1 tggctctgttagtttccacaatgcagccatttaacaccatctcatccaaaatgatgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tggctctgttagtttccacaatgcagccatttaacaccatctcatccaaaatgatgtgaa 568
Query: 61 ctttatccaaattaaacattatctgggtcacattaaggaaattagctggagaatttaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctttatccaaattaaacattatctgggtcacattaaggaaattagctggagaatttaata 508
Query: 121 aataaaaataataacaaggcttagcctgatactctcctggtataggtaaacctaaacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aataaaaataataacaaggcttagcctgatactctcctggtataggtaaacctaaacctg 448
Query: 181 cttttgtttttcaaatccttagtagacagacaggacctctatatacatgtccatacctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttttgtttttcaaatccttagtagacagacaggacctctatatacatgtccatacctat 388
Query: 241 gttcactctggctaggaaagtgggataagtagatattgagacagccatttaaa-t-tgtg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 387 gttcactctggctaggaaagtgggataagtagatattgagacagccatttaaactatgtg 328
Query: 299 tgtgtgtgtgtgtgtgcatgcatgtgtgct-tgtgtgtgcgtg----tatacaagcacta 353
|||||||||||||||| || |||||| | |||||||||| | |||||||||||||
Sbjct: 327 tgtgtgtgtgtgtgtg--tg--tgtgtg-tgtgtgtgtgcgcgcgagtatacaagcacta 273
Query: 354 gcgtatgagtgtatgtatttgtgctaaggatggaactcagcaccttgcacgttaggcacc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcgtatgagtgtatgtatttgtgctaaggatggaactcagcaccttgcacgttaggcacc 213
Query: 414 actccagcactgagctgcctcccaatgcagaacggcacgcgtggggtagaatataagtgc 473
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 212 actccagcactgagctgcctcccaatgcagaacggcaggcgtggggtacaatgtaagtgc 153
Query: 474 cagcgcaca 482
|||||||||
Sbjct: 152 cagcgcaca 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
