BAC Information

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BAC

Clone NameMSMg01-433P02
Chromosome12 (Build37)
Map Location 85,067,745 - 85,273,152
singlet/doubletdoublet
Overlap genePsen1, Papln, Numb, LOC100042325
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950, Rbm25
Downstream gene2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433P02.T7 (MSMg01no433_p02.b1)MSMg01-433P02.TJ (MSMg01no433_p02.g1)
ACCAG525607AG525608
length824735
length of high quality
(start - end)
178 (45 - 222)443 (68 - 510)
definitionCHROMAT_FILE: MSMg01no433_p02.b1 PHD_FILE: MSMg01no433_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:11 2005CHROMAT_FILE: MSMg01no433_p02.g1 PHD_FILE: MSMg01no433_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,272,975 - 85,273,152)(85,067,745 - 85,068,186)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGATCCGCGGAATTC
TAGGAATTACCAAGTTTAACAAATCCCAAGCTGCCTCGTGCTCACGCTCT
AATATTTAAACTACTAGGCTAGGTCAATTCCAGGCCTCCAGTTTTGTTTC
CACATAATGTGAAGCTGCTTTGGGACAGTGTGGAATTTTACTCAAGGGGA
GAGGGGGCTAGAACAGGGAGTGTAGGAGGAAGACTGTAGAGAGCATCAGG
CACACAGACATTACACGCGCTCCTGCGCGATGAGGAGACGCCTCACCCCG
GATTGAACTTGCTCCGCATATTCCACAACCTGACCCCTTACCCTCCGTTT
CCGTGCAACAGCTTACTCTACGCTTCGCGTCTAACAGCCTCTTTACCCAT
TGTCTTTTTCTCCCCCCCCCCCCTTTTGTTCCCTATACTCCACTATTCTC
CTCTCTAATTCACCTCCCCTTACCTAACTAATCACCCCTCTTGTTTCTTC
CTTTCTTACTCCCATCCTCCTCCCCTTATTTTTTCTCTCCCCCTCTTTTC
TTTCTTCTCCCTCTATTTTTCCCTCACTTCTTCGAATATCCTTTCTTCTT
ATTCTCTAATACTCGCGTCTTCTCCTCGCTTTCTCCTTCCTCTTCCCCTT
TCCCTCTCTTATTTTCTCTCACCACTTCTTTTTCCTTCTTTCTTCTTCCT
TCCCCTTCTCTTCTATCTACTATAATCCGCCCCCCCTCCCCACCGCCCAT
CCTTTTGGTCTCATTTCCCCTCCCGACACCTCTAACAATTTTTTTTTTCT
CCCTCCTCTTCTCTCCTCCTCTTA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTCCATGAGTTACTCTCTCCACAACCTTCAGC
CTCTGCTCACAGCACAGGGGAGACCCCGCAGCTTCAGGTCTTCTGAGTGT
GGACGTGCTGGGCACCCAGTGTTGACATAGTGACTCTCAACCTGTTCCTT
ACAAGGTCTCAAAATGGTCTATCAGAAGTGTTCTGAAGCCTTTTACGTAA
ATTAATTTTCATTCATTTTAATTGTGCTAAAAATAACTGAATCTATTCAT
TTCAAGATTCTATAAGGGGAAACATGTCATAAAACCAAAATAGGTACAGG
ATGTGGCAGCTTTAAAACAGCTGAAGATCTCATTAGTTGCAAGCACAGGA
AAGCTTGCTTTTCTCACTTGAACATGTAAATGGAAGTGTAGAGGAGTGTT
ACCACTGTGCTGTTCTTACGTTCTGCGGTGAGTGACTGAAGGCCTGAAGG
AAGTGACGTCAGCTGTCAAGTTTCCCATTCCTGTTTTACCTATACCTGGT
TGACATTTTCAAATGCTTGAGGCTTTCCTGCATTTCCTGCACATATAAAA
TGATAGAACAACTGCACTTTTATGGGCGGAAATGGTCCTCCACCTCCCTT
TACCCTCCCTCTCTCCATCTTCCTTCCATTCCCTCGTCCTTTTCCTACTC
TCCTTCTCCATTCCTCCCCCATTTCTTTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_p02.b1 MSMg01no433_p02.b1 CHROMAT_FILE:
MSMg01no433_p02.b1 PHD_FILE: MSMg01no433_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:11 2005
         (178 letters)



>mm_chr12_85272775_85273352
          Length = 578

 Score =  313 bits (162), Expect = 3e-90
 Identities = 174/178 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattctaggaattaccaagtttaacaaatcccaagctgcctcgtgctcacgctctaata 60
           |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaattctaggaaatacgaggtttaacaaatcccaagctgcctcgtgctcacgctctaata 319

                                                                       
Query: 61  tttaaactactaggctaggtcaattccaggcctccagttttgtttccacataatgtgaag 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttaaactactaggctaggccaattccaggcctccagttttgtttccacataatgtgaag 259

                                                                     
Query: 121 ctgctttgggacagtgtggaattttactcaaggggagagggggctagaacagggagtg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgctttgggacagtgtggaattttactcaaggggagagggggctagaacagggagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no433_p02.g1 MSMg01no433_p02.g1 CHROMAT_FILE:
MSMg01no433_p02.g1 PHD_FILE: MSMg01no433_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:11 2005
         (443 letters)



>mm_chr12_85067544_85068386
          Length = 843

 Score =  832 bits (430), Expect = 0.0
 Identities = 439/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctccatgagttactctctccacaaccttcagcctctgctcacagcacaggggagaccccg 61
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctccatgagttactctctccacgaccttcagcctctgctcacagcacaggggagaccccg 261

                                                                       
Query: 62  cagcttcaggtcttctgagtgtggacgtgctgggcacccagtgttgacatagtgactctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagcttcaggtcttctgagtgtggacgtgctgggcacccagtgttgacatagtgactctc 321

                                                                       
Query: 122 aacctgttccttacaaggtctcaaaatggtctatcagaagtgttctgaagccttttacgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aacctgttccttacaaggtctcaaaatggtctatcagaagtgttctgaagccttttacgt 381

                                                                       
Query: 182 aaattaattttcattcattttaattgtgctaaaaataactgaatctattcatttcaagat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaattaattttcattcattttaattgtgctaaaaataactgaatctattcatttcaagat 441

                                                                       
Query: 242 tctataaggggaaacatgtcataaaaccaaaataggtacaggatgtggcagctttaaaac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctataaggggaaacatgtcataaaaccaaaataggtacaggatgtggcagctttaaaac 501

                                                                       
Query: 302 agctgaagatctcattagttgcaagcacaggaaagcttgcttttctcacttgaacatgta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agctgaagatctcattagttgcaagcacaggaaagcttgcttttctcacttgaacatgta 561

                                                                       
Query: 362 aatggaagtgtagaggagtgttaccactgtgctgttcttacgttctgcggtgagtgactg 421
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 562 aatggaagtgtagaggagtgttaccactgtgctgtttttacgttctgcggggagtgactg 621

                                 
Query: 422 aaggcctgaaggaagtgacgtc 443
           ||||||||||||||||||||||
Sbjct: 622 aaggcctgaaggaagtgacgtc 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)