BAC Information

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BAC

Clone NameMSMg01-435A06
Chromosome12 (Build37)
Map Location 101,931,270 - 102,095,296
singlet/doubletdoublet
Overlap geneRps6ka5, LOC100040123, 9030617O03Rik
Upstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
Downstream geneEG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435A06.T7 (MSMg01no435_a06.b1)MSMg01-435A06.TJ (MSMg01no435_a06.g1)
ACCAG526418AG526419
length761767
length of high quality
(start - end)
494 (44 - 537)378 (72 - 449)
definitionCHROMAT_FILE: MSMg01no435_a06.b1 PHD_FILE: MSMg01no435_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:36 2005CHROMAT_FILE: MSMg01no435_a06.g1 PHD_FILE: MSMg01no435_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,931,270 - 101,931,759)(102,094,919 - 102,095,296)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCTCATGAGTATCAGGCTGGCTGAGATCCTACAAGGAGGTAAGGCT
CTTCAGCTACCTAACATCAGAAGACAGGACTGAATCATGCATCACTATCC
AGGAAAGAGATTAAAATAAAAAATTCAAAGTAAGAACATTAGTTGCCTTC
ACACCATCATAACCAGAGGCCAGAGTAAGCTGTTTACCACTGAGTGTCCT
GGACCATCTACAGCACTTTCTAGTACCAAGATGCATAGTTCCTTTATTTT
GTCAGGTTTCTTTTGTCATATTTCACCTGGCAGAAGATTTCAAATTTTGT
TTCTTATGACTAACTTCTTGCAGAATAATGGCTTGGGTTATGACTTATCT
AAAATTTTGTCACTTTCTCATGATTTGGGTTATAAGTGTCCAGTATTTAA
GTAACATGCATCTTGGTGTTATCACAGCCAGCAGCATCTAATGTCAAGCC
ATCTGATGTTAGTTTTGCTCACCCAGGCCAAATGCTGCCCAGGCTCTCCA
CTATCTGGTACTAATTTTCCCCATATAATAAGCAACCTGTGGTGGAAAAC
TACTAGACCATTAAAAATACCCGGTCATCATTGGCTTAAGGGCTTCCTCT
CCTGTGGAAATAAATCTTGGACCAAGGCAATCTTTTAATTGGTATACCCT
TTATTGGCCGCTGCTCCCGACCTTTCTTCCATCTTTCTCCCGTCCACACC
TTCCATCTTTN
AATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTGCCCTCACTTACCAGTTGATGAGA
TGCCAGGAATCTTTTGTGCGGCAAGGAAAATGTCATCAATGGGGTCAACT
AAGTGCTTGATGTTCATCTTCCTCGCGTTGTAGTAATTGCCATCAGCAGC
CCTTCCCGCACGCTCTATGGCCACCAGATGGTCAAATCTGCCCGGAAGCA
ATGGCGGTAAGTCTTCTTAGGGAAAAATGGCAGCTTCCCTGGCTCTAAGC
TTGTGTGTCTCTGTGAATGACCCTTGGTGTCTTAACTTCCCATAAGCCTA
TGAGCTTGATTGAGTGAGGACCTACTTTGTGCAAGAGCCAACACAGGGTA
CTGATTCACTACATTGTTGGTGGGAAGACATAGCCCAGGTCTGATGCCAG
AGCTTGGGGAGTTCCTGCGACCTCCACTCTGGTAACGCCGGATGTTTCAC
TATGCTTGATACTTTGCGCCAATAATTCCTAATATGTTTTGAGGAGAAAG
CCGAAATTATTTTAGTCTATTTATATCCACCCTATTTATCTTTCTCCCCC
CTATTTTTCCCCCGGTATTTATTACTACTTCTCATTTTAATTTAGTCCTC
CCCCTTTTCTTTACACAAAATATAATCTGAAAAGCATGCGTGTAATATAT
ATTTTAGAGTCCATAACACAAACGGAATACCCTATTAGCCATTTGACTCC
TTAACTGCCTGTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_a06.b1 MSMg01no435_a06.b1 CHROMAT_FILE:
MSMg01no435_a06.b1 PHD_FILE: MSMg01no435_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:36 2005
         (494 letters)



>mm_chr12_101931066_101931959
          Length = 894

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccctcatgagtatcaggctggctgagatcctacaaggaggtaaggctcttcagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccctcatgagtatcaggctggctgagatcctacaaggaggtaaggctcttcagc 264

                                                                       
Query: 65  tacctaacatcagaagacaggactgaatcatgcatcactatccaggaaagagattaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacctaacatcagaagacaggactgaatcatgcatcactatccaggaaagagattaaaat 324

                                                                       
Query: 125 aaaaaattcaaagtaagaacattagttgccttcacaccatcataaccagaggccagagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaattcaaagtaagaacattagttgccttcacaccatcataaccagaggccagagta 384

                                                                       
Query: 185 agctgtttaccactgagtgtcctggaccatctacagcactttctagtaccaagatgcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctgtttaccactgagtgtcctggaccatctacagcactttctagtaccaagatgcata 444

                                                                       
Query: 245 gttcctttattttgtcaggtttcttttgtcatatttcacctggcagaagatttcaaattt 304
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttctttattttgtcatgtttcttttgtcatatttcacctggcagaagatttcaaattt 504

                                                                       
Query: 305 tgtttcttatgactaacttcttgcagaataatggcttgggttatgacttatctaaaattt 364
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 505 tgtttcttatgactaacttcttgaagaataatggcttgagttatgacttatctaaaattt 564

                                                                       
Query: 365 tgtcactttctcatgatttgggttataagtgtccagtatttaagtaacatgcatcttggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcactttctcatgatttgggttataagtgtccagtatttaagtaacatgcatcttggt 624

                                                                       
Query: 425 gttatcacagccagcagcatctaatgtcaagccatctgatgttagttttgctcacccagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttatcacagccagcagcatctaatgtcaagccatctgatgttagttttgctcacccagg 684

                     
Query: 485 ccaaatgctg 494
           ||||||||||
Sbjct: 685 ccaaatgctg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no435_a06.g1 MSMg01no435_a06.g1 CHROMAT_FILE:
MSMg01no435_a06.g1 PHD_FILE: MSMg01no435_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:36 2005
         (378 letters)



>mm_chr12_102094719_102095496
          Length = 778

 Score =  708 bits (366), Expect = 0.0
 Identities = 375/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgccctcacttaccagttgatgagatgccaggaatcttttgtgcggcaaggaaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 578 tcagtgccctcacttaccagttgatgagatgccaggaatcttttgtgcagcaaggaaaat 519

                                                                       
Query: 61  gtcatcaatggggtcaactaagtgcttgatgttcatcttcctcgcgttgtagtaattgcc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcatcaatggggtcaactaagtgtttgatgttcatcttcctcgcgttgtagtaattgcc 459

                                                                       
Query: 121 atcagcagcccttcccgcacgctctatggccaccagatggtcaaatctgcccggaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atcagcagcccttcccgcacgctctatggccaccagatggtcaaatctgcccggaagcaa 399

                                                                       
Query: 181 tggcggtaagtcttcttagggaaaaatggcagcttccctggctctaagcttgtgtgtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tggcggtaagtcttcttagggaaaaatggcagcttccctggctctaagcttgtgtgtctc 339

                                                                       
Query: 241 tgtgaatgacccttggtgtcttaacttcccataagcctatgagcttgattgagtgaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtgaatgacccttggtgtcttaacttcccataagcctatgagcttgattgagtgaggac 279

                                                                       
Query: 301 ctactttgtgcaagagccaacacagggtactgattcactacattgttggtgggaagacat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 278 ctactttgtgcaagagccaacacagggtactgattcactacattgttggtaggaagacat 219

                             
Query: 361 agcccaggtctgatgcca 378
           ||||||||||||||||||
Sbjct: 218 agcccaggtctgatgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)