BAC Information

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BAC

Clone NameMSMg01-435F24
Chromosome12 (Build37)
Map Location 86,060,887 - 86,217,529
singlet/doubletdoublet
Overlap geneNpc2, Isca2, Ltbp2
Upstream genePsen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
Downstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435F24.T7 (MSMg01no435_f24.b1)MSMg01-435F24.TJ (MSMg01no435_f24.g1)
ACCAG526694AG526695
length796838
length of high quality
(start - end)		410 (40 - 449)316 (71 - 386)
definitionCHROMAT_FILE: MSMg01no435_f24.b1 PHD_FILE: MSMg01no435_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:05 2005CHROMAT_FILE: MSMg01no435_f24.g1 PHD_FILE: MSMg01no435_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,060,887 - 86,061,291)(86,217,214 - 86,217,529)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTC
AATACACAGTAACCATTCTAATTTAAAAAATACTAAAATGATACTTTAAA
CCTTACCATAGCCATAATCATATTAAAGATGAAATACTCTAAACATTCCT
AAAAAAAGACACAGGTTAACAGATTATATTTATAACAAAGCAAAATCCAA
GACCACTATGTATGTATATATACATAGTGTTGACAATAATTATACTCTAA
GCTGGACCAGGTGGCACAGGCCTGTGATCACAAATCCTCAGGAGTCTGAG
GCAGGAGGATTGCTCTTTAATGCCTGGTCTACTACACATTCCAGGTGAGC
CAAGGCTACATGATGAGACTCTCTAAAAGCAGAAGAAGAAGGGGGCTTCC
CAGGGACTCTTTCTGGATAAGCACTCGGACACCGGTGGGAGTGGAAGAGG
AGGTGTCACCAGTGGGTCAAGGCCAGGTAACTTCTATAAGGCCTAATTTT
TGGGCCAGAATAAATTTCCTTTTTAATTCCAGAACACAAAATGGGTGGAG
TCTGAAAAAAAAATGGTCATTTTTTTACATCTATTCCCCGCTTTCCCCCT
TTTCCCCCACCCCCTTTTTTTCTCTTTTCCTTATCCATCTTCCAACACCT
CTTCCCCTTTTTTGTCACCTCTACTTTCCCCCCTTTTTTTTTCTTCCCCC
TTTTCTTTCCTCCCTTTTTCTCTTCTTTTTCACCTCCTCCCCTCTCTTTC
ATTTATTTTCCCCCTTTTTTTTTTTTACTTTTCCCCCATAATCCCN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGTCTCCCGTAATAAGGGGGCCGAGCTGT
CCCTCCAAGGAGGGGGGCATGGCGTGGATAAAAGAGGCGAAAAAGCAGGG
GGCGGTTTCCAAAAATAAAACCCTTCGGTTCCCCTTCAGACGGCGGCAGT
GCGGGAGCGAAGGTGCGGCAGGCTCGGGCTCGGTGCGCAGCCCGGGCAGC
TCACGCCATACAGCCCTTGCCTAGGAACCCCTGGACCCCCAAACGGCTGT
TTCAGAGGTCCCCTAGACGGGAAGGGGCAAGTCGCCAGGCGGGTCTGTGG
AGCGAACGATGGAGAGCACCTCCCCGCGAGGTCTCCGGTGTCCACAGTTC
TGCAATTACTCCGGCGCCCTGAGTATTGCGATCTCCGCTCGTTGGTCCGG
TATAATCCGACGGTTGTTTTTGTCCGCCTTTTTTTTCTCCCTCTTTTGTT
TGCCTTTCTCCGCCTATTTTACTTTTTCTTCCCCTCCCTTTTTTTGTTCT
TTTTTTCCTCTCAATTTTCCCTCTTCCCTCTCTTCTTTCACCCCTTTCCT
TTTATTCTCTCTATTTATCTTTTTCCTTCCCCTCTCTTTTTGTTATATCT
TTTTCTTTTCTATTACATGCTCTTCGCTTTATTTTGATTTTGCGCATCAT
TTATTCGTCTTTATCCCTCTTCGTCATCTTTCTTCTCTCCCCTTTTTCTT
CTTTCTTTTCTTCTTTCCCTCTCTTTTTTTCTTTTATTTTGTTCTATTAT
CTTTTTTCCCGCTCTTTTCTTTTTTATATTATCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_f24.b1 MSMg01no435_f24.b1 CHROMAT_FILE:
MSMg01no435_f24.b1 PHD_FILE: MSMg01no435_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:05 2005
         (410 letters)



>mm_chr12_86060682_86061491
          Length = 810

 Score =  768 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaatacacagtaaccattctaatttaaaaaatactaaaatgatactttaaacctt 65
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaatacacagtaaaaattctaatttaaaaaatactaaaatgatactttaaacctt 265

                                                                       
Query: 66  accatagccataatcatattaaagatgaaatactctaaacattcctaaaaaaagacacag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accatagccataatcatattaaagatgaaatactctaaacattcctaaaaaaagacacag 325

                                                                       
Query: 126 gttaacagattatatttataacaaagcaaaatccaagaccactatgtatgtatatataca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttaacagattatatttataacaaagcaaaatccaagaccactatgtatgtatatataca 385

                                                                       
Query: 186 tagtgttgacaataattatactctaagctggaccaggtggcacaggcctgtgatcacaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tagtgttgacaataattatactctaagctggaccaggtggcacaggcctgtgatcacaaa 445

                                                                       
Query: 246 tcctcaggagtctgaggcaggaggattgctctttaatgcctggtctactacacattccag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcctcaggagtctgaggcaggaggattgctctttaatgcctggtctactacacattccag 505

                                                                       
Query: 306 gtgagccaaggctacatgatgagactctctaaaagcagaagaagaagggggcttcccagg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgagccaaggctacatgatgagactctctaaaagcagaagaagaagggggcttcccagg 565

                                                        
Query: 366 gactctttctggataagcactcggacaccggtgggagtggaagag 410
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gactctttctggataagcactcggacaccggtgggagtggaagag 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_f24.g1 MSMg01no435_f24.g1 CHROMAT_FILE:
MSMg01no435_f24.g1 PHD_FILE: MSMg01no435_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:05 2005
         (316 letters)



>mm_chr12_86217014_86217729
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtctcccgtaataagggggccgagctgtccctccaaggaggggggcatggcgtggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttgtctcccgtaataagggggccgagctgtccctccaaggaggggggcatggcgtggata 457

                                                                       
Query: 61  aaagaggcgaaaaagcagggggcggtttccaaaaataaaacccttcggttccccttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaagaggcgaaaaagcagggggcggtttccaaaaataaaacccttcggttccccttcaga 397

                                                                       
Query: 121 cggcggcagtgcgggagcgaaggtgcggcaggctcgggctcggtgcgcagcccgggcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cggcggcagtgcgggagcgaaggtgcggcaggctcgggctcggtgcgcagcccgggcagc 337

                                                                       
Query: 181 tcacgccatacagcccttgcctaggaacccctggacccccaaacggctgtttcagaggtc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcacgccatacagcccttacctaggaacccctggacccccaaacggctgtttcagaggtc 277

                                                                       
Query: 241 ccctagacgggaaggggcaagtcgccaggcgggtctgtggagcgaacgatggagagcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 ccctagacgggaaggggcaagtcgccaggcgggtctgtggagcgaacgatggaaagcacc 217

                           
Query: 301 tccccgcgaggtctcc 316
           ||||||||||||||||
Sbjct: 216 tccccgcgaggtctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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