BAC Information

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BAC

Clone NameMSMg01-435K16
Chromosome12 (Build37)
Map Location 33,288,360 - 33,398,692
singlet/doubletdoublet
Overlap genenone
Upstream geneBcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
Downstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K16.T7 (MSMg01no435_k16.b1)MSMg01-435K16.TJ (MSMg01no435_k16.g1)
ACCAG526918AG526919
length753796
length of high quality
(start - end)		442 (45 - 486)155 (74 - 228)
definitionCHROMAT_FILE: MSMg01no435_k16.b1 PHD_FILE: MSMg01no435_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:30 2005CHROMAT_FILE: MSMg01no435_k16.g1 PHD_FILE: MSMg01no435_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,398,549 - 33,398,692)(33,288,360 - 33,288,509)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAGAACTATACTCAGGCGACTCTTTTTAACCATCCCCAGCATAC
AAATTGTCTGATGCTCTGAATAAAGTTGGCTATTCCATGAGACTTTAGCC
CACCTAATTTTTTTCTTTATAGATGTGACTTTATTGTATCTTTTTTTTCT
CTCCACCCTCCATTAGGTATTTAACTCATCTACATCTCCAATGCCACACC
AAAAGTCCCCCACATCCACCCACCCCCAATCCCCCGCCCACCCACTCCCC
CCCCTAGGCCCTGGCGTTCCCCCGCACTAGGGCACACAAAGTCTGCAAGT
CCAATGGGCCTCTCTCTCCAGCGATGGCCGACCAGGCCATCCTTCAATAC
ACATGCAGCTAGAGTCAAGAGCTCCGGGGCACTGGCCAGTCCACAATGCT
GTTCCACCCATAGGGCTGCAGATCCCACCAGCTCCCTGGNCACCACCTCT
AGCTCCTCCACTGGGAGTCCCACGATCCATCCACTAGCCGACTGTGAGCA
ACTCACTCTGTGGTTGCTAGGCCCCGCATAGAGCTTCCAAGAGACAGCTT
ATTTCGGGTCCTTTTCATATAATTTTGTCCGGGTTTCCATGTGGTTTTTC
CTCGTACTCTTATTATGCTGCGGTAATCTCTGTTTTTTTCCATCTTAACG
GCTTCCCCCCCCTCGATAGTTCTTATTTTCTCCTTTTTACCTATTCTTAC
TTC

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAGGCCATGACTGGCTCCATGGTAA
AGCACGTGTCTGGCACTAAGGCCTTAGACTCATGTGTCAGCAGGAAAAAG
GAGATGAGAAACAGCTGGGTGGGAGGAGGTGAAAATCGTGGAGAATTGTG
GAATTTAATCTGTTTTCAAGGTAGACTAATATTGCGGTTCATGTATGATG
TTGTATGATTTTAAATTCTCCATGCTTTTTCTGATTATTTATTGTTAACA
ATTGTCTACATTTTTTTTTTTTTTTCAGCTATTGGCTGTGGTGTATACCT
TTTGTTTTTTTTTTTGACCCCCTTTTCTATTTTGGCTACATTTTTTTGTT
TTTCTTTTTTTTCTCCCCCTTCTGCCCTTTTTTTTTCCCCTCCCCTTTTT
TATACCTCCTGCCTCTTTTTTGTTTTTCTTTCCTCTCTTATCTTTTTCCT
TTTGTTTCCCTCTCTTTTTTTTTTCTTCCATTTTATCCTCTCCTTCTTTT
CTTTCACCTTTCTCCTTTTTTTTTTTCTTTCCTTTTTTTCTCCTTTTTTT
TCTTTCTCCCCTTTTTTATTGCTCCAAATTTTTTTTCCCTTCTTTCCTTC
TTTTTGTCCTTCCCTCTTATTTTCTCTATCCTTTTTTTTTTTATATATTT
TATTTATCTTTACATAATATATTTTTTGTTCCTTTCTTACTCCTTTCCTC
ACTTCCTATTCTCCTTATTTTTAGCTCTTTTTATCTTTTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k16.b1 MSMg01no435_k16.b1 CHROMAT_FILE:
MSMg01no435_k16.b1 PHD_FILE: MSMg01no435_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:30 2005
         (442 letters)



>mm_chr12_33398345_33399186
          Length = 842

 Score =  279 bits (144), Expect = 3e-79
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgagaactatactcaggcgactctttttaaccatccccagcatacaaattgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaattcatgagaactatactcaggcgactctttttaaccatccccagcatacaaattgtc 289

                                                                       
Query: 65  tgatgctctgaataaagttggctattccatgagactttagcccacctaatttttttcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgatgctctgaataaagttggctattccatgagactttagcccacctaatttttttcttt 229

                                   
Query: 125 atagatgtgactttattgtatctt 148
           ||||||||||||||||||||||||
Sbjct: 228 atagatgtgactttattgtatctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_k16.g1 MSMg01no435_k16.g1 CHROMAT_FILE:
MSMg01no435_k16.g1 PHD_FILE: MSMg01no435_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:30 2005
         (155 letters)



>mm_chr12_33288160_33288714
          Length = 555

 Score =  275 bits (142), Expect = 1e-78
 Identities = 148/150 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggccatgactggctccatggtaaagcacgtgtctggcactaaggccttagactcat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tctaggccatgactggctccatggtaaagcatgtgtctggcactaaggccttagactcat 260

                                                                       
Query: 61  gtgtcagcaggaaaaaggagatgagaaacagctgggtgggaggaggtgaaaatcgtggag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtgtcagcaggaaaaaggagatgagaaatagctgggtgggaggaggtgaaaatcgtggag 320

                                         
Query: 121 aattgtggaatttaatctgttttcaaggta 150
           ||||||||||||||||||||||||||||||
Sbjct: 321 aattgtggaatttaatctgttttcaaggta 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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