Query= MSMg01no435_o20.b1 MSMg01no435_o20.b1 CHROMAT_FILE:
MSMg01no435_o20.b1 PHD_FILE: MSMg01no435_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:51 2005
(387 letters)
>mm_chr12_84635892_84636678
Length = 787
Score = 721 bits (373), Expect = 0.0
Identities = 379/381 (99%)
Strand = Plus / Plus
Query: 7 cttgcttttaggtggctgaaattgcttttgaagaggctggcttttaaagacacattcgtt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cttgcttttaggtggctgaaattgcttttgaagaggctggcttttaaagacacattcgtt 266
Query: 67 acaggtatcctttagtacaacaggaactgatgaagtctacaccgtataatacacgtttct 126
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267 acaggtatcctttagtacatcaggaactgatgaagtctacaccgtataatacatgtttct 326
Query: 127 taacaatggccgatttgagagagagaacagagggccagcagtgggttcgagaatcaggtt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taacaatggccgatttgagagagagaacagagggccagcagtgggttcgagaatcaggtt 386
Query: 187 gctgggtgtcgagacctggttccttactatgtgtggtacttaggtgcattcaaccgcatt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctgggtgtcgagacctggttccttactatgtgtggtacttaggtgcattcaaccgcatt 446
Query: 247 tctaggcctctgcctcttcacccataacctggggtcatgcaagcatttatctcgggatag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctaggcctctgcctcttcacccataacctggggtcatgcaagcatttatctcgggatag 506
Query: 307 aagtcaaatgaactactctaaggaaagcactcaaaacagagcctagtacacacgttgatt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagtcaaatgaactactctaaggaaagcactcaaaacagagcctagtacacacgttgatt 566
Query: 367 ctgttctctggagcaggggca 387
|||||||||||||||||||||
Sbjct: 567 ctgttctctggagcaggggca 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_o20.g1 MSMg01no435_o20.g1 CHROMAT_FILE:
MSMg01no435_o20.g1 PHD_FILE: MSMg01no435_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:51 2005
(435 letters)
>mm_chr12_84788337_84789170
Length = 834
Score = 741 bits (383), Expect = 0.0
Identities = 421/437 (96%), Gaps = 8/437 (1%)
Strand = Plus / Minus
Query: 1 tttgtaaacggaagaaaaggaacctgtgagctacttatggggaagagccagttaatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tttgtaaacggaagaaaaggaacctgtgagctacttatggggaagagccagttaatgcag 773
Query: 61 tatgtgttaagagacaaggggtttggcctggcaccatcgtcaacacttggatgaggatca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tatgtgttaagagacaaggggtttggcctggcaccatcgtcaacacttggatgaggatc- 714
Query: 121 gaagaagttctaggtcacccttgactacatagctgaggtggaagttagtctgggttacat 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 --agaagttctgggtcacccttgactacatagctgaggtggaagttagtctgggttacat 656
Query: 181 gcaaccttgtctccaaagaaaggtctagtttggaggccacgccaattggaattaaaatga 240
||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||||
Sbjct: 655 gcaaccttgtctccaaagaaaggtctattttggaggtcatgccaatcggaattaaaatga 596
Query: 241 atcaatggta--tttctcagttgtactgtgaccgtagaagacaagactgcatgtccaagc 298
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 595 atcaatggtagc---ctcagttgtattgtgaccgtagaagacaagactgcatgtccaagc 539
Query: 299 cagctaagcacattggagtcctctttcaaggctttggatggcaccagggtgcaaggagcg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagctaagcacattggagtcctctttcaaggctttggatggcaccagggtgcaaggagcg 479
Query: 359 ttagagcacccaaggctgagctgaccttccaatagggtggccagagagcagcctttactt 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 478 ttagagcacccaaggctgagctgaccttccaatagggtagccagagagcagcctttactt 419
Query: 419 cttggtgtttggattaa 435
|||||||||| ||||||
Sbjct: 418 cttggtgtttagattaa 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 834
Length adjustment: 9
Effective length of query: 426
Effective length of database: 825
Effective search space: 351450
Effective search space used: 351450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
