Query= MSMg01no436_e03.b1 MSMg01no436_e03.b1 CHROMAT_FILE:
MSMg01no436_e03.b1 PHD_FILE: MSMg01no436_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:17 2005
(609 letters)
>mm_chr12_58279174_58280179
Length = 1006
Score = 1042 bits (539), Expect = 0.0
Identities = 592/615 (96%), Gaps = 14/615 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcttgattta---taaaggaactagaaactgcctagacattgtgcttcatacc 60
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggaattctcttgat--agaataaaggaactagaaactgcctagacattgtgcttcatacc 256
Query: 61 tatggtctcaacattcagggtcatcatgactttgagaccagtctagacttcatattccgg 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 257 tatggtctcaacactcagggtcatcatgactttgagaccagtctagacttcatattccag 316
Query: 121 gccaactactactacagaataagaccctgtggcaagacaaaaagg----aagaaaaaaaa 176
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 317 gccaactactactacagaataagactctgtggcaagacaaaaagggagaaagaaaaaaaa 376
Query: 177 acctagaattgatgcttagtaaaataaagtcaactgctcaaaatcacccccccccaatat 236
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 377 acctagaattgatgcttagtaaa-taaagtcaactgctcaaaatcacccccccc--atat 433
Query: 237 gcatcacttcttgtgtttttctatatcttttcactttcttttttt--ggtttttcaagac 294
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 434 gcatcacttcttgtgtttttctatatcttatcactttctttttttttggtttttcaagac 493
Query: 295 agggtttctctgtgtagccctagctgtcctggaactcactttgtagaccaggctggcctt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agggtttctctgtgtagccctagctgtcctggaactcactttgtagaccaggctggcctt 553
Query: 355 gaactcaaaaatccacctggctctgcctcccaagtgctaggattaaaggcatgcaccacc 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaactcagaaatccacctggctctgcctcccaagtgctaggattaaaggcatgcaccacc 613
Query: 415 actgcccggctatcttatcactttcttatcaaaatatcatcattagcaaatttctcatgc 474
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 614 actgcccggctatcttatcaccttcttatcaaaatatcatcattagtaaatttctcatgc 673
Query: 475 acatattttttctgggcacattaatatggtgaggccttacccttaaacacagtattactc 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 674 acatattttttctgggcacattaatatggtgaggccttacccttaaacacagtattgctc 733
Query: 535 aacttccactacacactggaatcaaatggagcaatttaaacactggtgagtacttaattc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aacttccactacacactggaatcaaatggagcaatttaaacactggtgagtacttaattc 793
Query: 595 aatccttggagactg 609
||||||| |||||||
Sbjct: 794 aatccttagagactg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1006
Length adjustment: 10
Effective length of query: 599
Effective length of database: 996
Effective search space: 596604
Effective search space used: 596604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_e03.g1 MSMg01no436_e03.g1 CHROMAT_FILE:
MSMg01no436_e03.g1 PHD_FILE: MSMg01no436_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:17 2005
(621 letters)
>mm_chr12_58397035_58398051
Length = 1017
Score = 907 bits (469), Expect = 0.0
Identities = 493/503 (98%), Gaps = 4/503 (0%)
Strand = Plus / Minus
Query: 1 atgatcctactgtcctaccttttccattgttaggatttcaagtatgctccacatgactgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 atgatcctactgtcctaccttttccattgttaggatttcaagtatactccacatgactgg 440
Query: 61 ctattaacaaattaaccttcattaatttccctaccggtaaagtagaaaaatatccccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctattaacaaattaaccttcattaatttccctaccggtaaagtagaaaaatatccccctc 380
Query: 121 aaaaagtacttaggatcagtaaattatagaagcctcttagcaaagtattaacacagaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaaagtacttaggatcagtaaattatagaagcctcttagcaaagtattaacacagaaca 320
Query: 181 tagactcaataaatattaattatttcctttaaatcttctctgtgaacagttacattctct 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagactcaataaat----attatttcctttaaatcttctctgtgaacagttacattctct 264
Query: 241 atttttatttccaaatcttctcatcttttggtgaaatgagtacaaatgacatcaaattca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 atttttatttccaaatcttctcatcttttggtgaaatgagtacaaatgacataaaattca 204
Query: 301 aacttaaaattctattttaatttaattaatttttcttaaatattaagaaaagcaaaaatt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 203 aacttaaaattctattttaatttaattaatttttcttaaatgttaagaaaagcaaaaatt 144
Query: 361 atatttattgtcctaatattaatccaacttttatattggacaaccactctggaaattagt 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 143 atatttattgtcttaatattaatccaacttttatattggacaaccactctggaaatcagt 84
Query: 421 ctggcggttcctcagaaaattggacatagtactaccagaagatccagcaatacctttcct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ctggcggttcctcagaaaattggacatagtactaccagaagatccagcaatacctttccc 24
Query: 481 gggcatatacccagaagatgttc 503
|||||||||||||||||||||||
Sbjct: 23 gggcatatacccagaagatgttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1017
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1007
Effective search space: 615277
Effective search space used: 615277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
