BAC Information

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BAC

Clone NameMSMg01-436H04
Chromosome12 (Build37)
Map Location 96,486,198 - 96,486,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436H04.T7 (MSMg01no436_h04.b1)MSMg01-436H04.TJ (MSMg01no436_h04.g1)
ACCAG527512AG527513
length760767
length of high quality
(start - end)
564 (52 - 615)476 (81 - 556)
definitionCHROMAT_FILE: MSMg01no436_h04.b1 PHD_FILE: MSMg01no436_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:31 2005CHROMAT_FILE: MSMg01no436_h04.g1 PHD_FILE: MSMg01no436_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATAACTCTCCTAAAGAGATACAGGAGAACACTGCTAAA
GAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACA
AGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTA
TAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACC
ATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGA
GGCAATGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATG
CCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCA
GAAGACTCCATAGAGAACATCGGCGCAACAATCAAAGAAAATGGAAAATG
CAAAAAGATCCTAACTAAAAACATCCAGGAAATCCAGGACACAATGAGAA
GACCAAACCTACAGATAATAGGAGTGGATGAGAGTGAAGATTTTCAACTC
ATAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAANACTTCCCAAA
TCTAAAGAAAGAGATGTCCATGAACATACAAGAAGCCTACAGAACTCCAA
ATAGACTGTACCAGAAAAGAAATTCCTCCCGACCCATATAATTCAGAACA
TCCAATGGTCTTAAATAAGATAGAATACTCAAAGCCGCTAGGGAAAAAAG
GCCAGTTACN
NNCCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGCAAGGGAGTAAAGGA
CCTGTGTTCCCTGACCCCTCACACTGGGCAACATATCTGTCCCTCTTTTA
AATACCCTGCTGTCCTTACTGTTAGGCTGCCTTCAAAACCACAGTTAAAA
GAACTCTGTGTTTCATCCTGTAGATTGGAGCCTATGGAAGAGAGGTTTTT
AGGAACAGGGAAGAAGGATAGGCATCAAAATATGAAACGTCATAGCTAAC
ATAGACATATATGTAACTTGAAAATATGTCATCTATTGCCTACATGAAAT
AAAGATATCAGACTTAGGACTCATATTAACTACTCTTTTCAACAAAGAGG
AATACAGAAGATATTTTCAAAACTCTTGCTCTAGCTCAGTAATTTAAAAC
ACGCAGATAAATATTTAAGTTTGTGCACAGACATGGAATAACCTAACAAC
AATTTAGAGAATGCATCTACATTCCTAGATAAGAGATAAGATGAAAGTGA
GTCATGAATGTGTGTATGAGCTTCTTTGCCCTTAGTTCATTCTATACTTC
TAAAGTGNGAAATATAAAAACCAAAAAGGGTGTTTCATGGCAAATAATCC
GCGAAATTACCGTGTCCTCCTTTTTCCCCCCCTAAACAAATTATTTTTAA
AACTTTCCCCTTCCTAAGAAAAAAAAAAAATAATGGGGGCAAACTCGCAG
GGAAATATATATCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_h04.g1 MSMg01no436_h04.g1 CHROMAT_FILE:
MSMg01no436_h04.g1 PHD_FILE: MSMg01no436_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:31 2005
         (476 letters)



>mm_chr12_96485998_96486873
          Length = 876

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagcaagggagtaaaggacctgtgttccctgacccctcacactgggcaacatatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagcaagggagtaaaggacctgtgttccctgacccctcacactgggcaacatatctgt 260

                                                                       
Query: 61  ccctcttttaaataccctgctgtccttactgttaggctgccttcaaaaccacagttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcttttaaataccctgctgtccttactgttaggctgccttcaaaaccacagttaaaa 320

                                                                       
Query: 121 gaactctgtgtttcatcctgtagattggagcctatggaagagaggtttttaggaacaggg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gaactctgtgtttcatcctgtagattggagcctatggaagagaggtttttaggaacgggg 380

                                                                       
Query: 181 aagaaggataggcatcaaaatatgaaacgtcatagctaacatagacatatatgtaacttg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaggataggcatcaaaatatgaagcgtcatagctaacatagacatatatgtaacttg 440

                                                                       
Query: 241 aaaatatgtcatctattgcctacatgaaataaagatatcagacttaggactcatattaac 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 aaaatatgtcatctattgcctacatgaaataaagatatcagacttaagactcatattaac 500

                                                                       
Query: 301 tactcttttcaacaaagaggaatacagaagatattttcaaaactcttgctctagctcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactcttttcaacaaagaggaatacagaagatattttcaaaactcttgctctagctcagt 560

                               
Query: 361 aatttaaaacacgcagataa 380
           ||||||||||||||||||||
Sbjct: 561 aatttaaaacacgcagataa 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)