BAC Information

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BAC

Clone NameMSMg01-436I11
Chromosome12 (Build37)
Map Location 26,592,082 - 26,592,349
singlet/doubletsinglet
Overlap genenone
Upstream geneMboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I11.T7 (MSMg01no436_i11.b1)MSMg01-436I11.TJ (MSMg01no436_i11.g1)
ACCAG527573AG527574
length7651,544
length of high quality
(start - end)
271 (50 - 320)---
definitionCHROMAT_FILE: MSMg01no436_i11.b1 PHD_FILE: MSMg01no436_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:37 2005CHROMAT_FILE: MSMg01no436_i11.g1 PHD_FILE: MSMg01no436_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATATTTTCCTCTATCACCTCATTCTACTGTGTATTTGCCT
CCTCTAGCCTCAGAATGACATGTTAGAAACTGCAAGTAGTGGAAAAGAAT
TTTAAAAAGACTCAGAGCTGAACGACACTCTTATTTAGGAAGATATGTTT
AAGTTTATACACCAGACTTTTTATGACATGTTCTGGGCTAGAATGGAATC
ATGTCAAGTTGGTGAAGTAGCCCCAGAACTCCAAATCTTCTGAGCTTTCT
TCCTGGAAAAAGCATAGCATCTGTTGGAGTAAAGAGAGGCAGGATGGCAG
GGAGGGCTTGTGGAACTTAGCTCCTGGTGCTGAGTGGTAGTAAGCGAGTC
TATTTTAACTTGATGGGCTGTGGGCTAATATTTGCATCCTTTTCTTCAGA
ATGTATTTTTACCAACTTTTAAAATTTCTTTCTGTGTTTTCATACTTGTT
GACAATTTGGGGATGGTGCACATATTACAATTCATAACCTTTGTTCTTTA
TTATGTCTTTTACTCACAACCCAATTAGATCATTTCCCTCCCTTCCCTTT
CTTTCCTTCTAGTACCCCCCCGGCCTGTTTCGTTCTTTTGTAACCGTCTC
CTCGTGGTTCCTCTTACTTTTTTTTTTTTCCTATAGCCTTCTTTTCTTTC
TCTGTCACCTGTTTTCCCCTTTACATCCCTGTCACTCTTACTGCTTAGCC
TTTTATCTACTTGTN
ATTATAATCAGATAGAGATATTGATGAAAGGCAATAGCCAGAGACCGAGC
CTGCTTTCCACAGAAGAGAGGAGGTGAAGAGATATAGTGAGTAATCTTTC
TCCCGNGAGTCATGTGAGCGAATGAGATAAATAGGTCTAATCGAATTGCG
CAGCGTGCACGAGTGAGAACTATAGATGTATCTCATAAGATCGTACTGAT
GTATATCTTGTTATGCCATCCGCTTACGCGTACTATGTACTTCTAGTATT
CATATANTAGACCACTCACTCCCCACTCTGGTGCCGTCATGATCTTTGCT
TCTGAACACCTCGCGATCTCTCTGCTCTCGATGCTACCAACGCTCACCTT
AACACTCTACACAGTGACATGAGTGCTTTAGACTAGTGCAGTGACCGAGA
GCATAATTCTGTACACGTCGACGGGTTCTGATGGTCTGCAGCATGCGTGT
GCAGATAAGCAGATCGCATGCTAACATTCACTCTCGCCNCGCCTGTATAT
CTATGTTCATGCTAGTGTATCGTGTCTCTGTTCTATTCTATACCCGCGCA
CTGAATGTGATACGAATATAGAGAGAGGATGACTAGTATAGTCGCTATGA
GTGATGCTATAGGATATTCATGTATGAGGCGGACGCAGCATGCACTACAT
AGTGCTGATTGTCTGAATGATGTGTATGTATAGATGNAGAGCAGTGTCNG
TATTGTAGATGACTGCGTGTNCACGATCCAGACTATACGTACACATANCT
NCTGCATCGCTCGAGTCTCTGTCCGTCTGTCGATCGTGGTTGTAGATTAG
TATGTANTATGTTCGTTGTCTCCGATCACTCGCTACGCTCTAGACACTGC
TGTTGCTGTCTACGCTGCGGTCTTATGTCANCAANCGNACGACGNTGATT
GTACTGTCACGTGATACTTCTCGTCACTCTGTCGCTAGCNTCTCTGTGGA
NGCATGTCGNTACTATGNTANCACGCAGTACGCGCGCATAGACTGTAATC
TATTGATATGTATCACCGTACTGCTCCTACATCATCGTATCTATACTGCT
CTAACNAAGTACACAGCATCTAACGACTCTAGCATCGANATATATTCAGC
ATCGCTGACTACGCACAGGCTCATGNACTCACTGATACACTNACNATGTC
TAACTCANACGTAGTCGTGACTNGCTGACTCGCCANTTGAGCATACATCT
TGTTACTCACCNACCTGAGATCGTCGACATGCTATCTGCGCTCGATCTGT
CTGTCGTCGCNTCGCGTNCACTACGCGGTCTGCACTCAGTGAGTATCACC
TCATATGCTGCTTNCATCGCTGCACGTGTTGATATCTGCGTATCTGATGT
ATACTGNATATNGTTNATGNTGCGNCGTTGTATCCTATCATCACATCTAC
TGCTACNGACGTACATGNCTATCTGCAGAGAGTGAGTAGCAGTCAGCGAT
CTGACNTATCGTGACGTANTANCNACNACCTCTGCATNTNATCACGACGA
TGCATTACGNCAGCTACGTCGNACATCTGTCAGCTCACCTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i11.b1 MSMg01no436_i11.b1 CHROMAT_FILE:
MSMg01no436_i11.b1 PHD_FILE: MSMg01no436_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:37 2005
         (271 letters)



>mm_chr12_26591879_26592549
          Length = 671

 Score =  495 bits (256), Expect = e-144
 Identities = 265/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatattttcctctatcacctcattctactgtgtatttgcctcctctagcctca 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatatttttttctatcacctcattctactgtgtatttgcctcctctagcctca 263

                                                                       
Query: 64  gaatgacatgttagaaactgcaagtagtggaaaagaattttaaaaagactcagagctgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaatgacatgttagaaactgcaagtagtggaaaagaattttaaaaagactcagagctgaa 323

                                                                       
Query: 124 cgacactcttatttaggaagatatgtttaagtttatacaccagactttttatgacatgtt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 cgacactcttatttaggaagatatgtttaagtttatacaccagactttttatgaaatgtt 383

                                                                       
Query: 184 ctgggctagaatggaatcatgtcaagttggtgaagtagccccagaactccaaatcttctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgggctagaatggaatcatgtcaagttggtgaagtagccccagaactccaaatcttctg 443

                                       
Query: 244 agctttcttcctggaaaaagcatagcat 271
           ||||||||||||||||||||||||||||
Sbjct: 444 agctttcttcctggaaaaagcatagcat 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)