BAC Information

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BAC

Clone NameMSMg01-439E19
Chromosome12 (Build37)
Map Location 28,843,254 - 28,843,692
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439E19.T7 (MSMg01no439_e19.b1)MSMg01-439E19.TJ (MSMg01no439_e19.g1)
ACCAG529687AG529688
length756837
length of high quality
(start - end)		439 (66 - 504)---
definitionCHROMAT_FILE: MSMg01no439_e19.b1 PHD_FILE: MSMg01no439_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:23 2005CHROMAT_FILE: MSMg01no439_e19.g1 PHD_FILE: MSMg01no439_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAATT
CAGTAGTTCTTCCTGGACACTTTATGGTCAAACACTTGTGTTTGTACGTA
GTTGGTGACATTCGTGAGCCTCTTCTGCCTCAGCTTCCACTTCTGCAGGA
TGGAGACAACTTCAAGGTAGTGAGTCTGAACTGGAACATGGCTAGGTTTA
AAGGGTCCGTATGCAGAAGAATGTGTGCTGTCAGAGGAACAGGTCTCCCA
CACTGACATCTCTACACAAACAGCACAGTTACAGCACTTGTAACTAGGGT
TTGGCTACATGTATGTGTGTGGACCTCATGCACACAGTATCCAAGGAGGT
CAGAAGAGAGAATTGGATCCCCTGGAACTGAAGAGGATGATGTGAGCTGC
CATGTTGGTTCTGAAAGCAAAACTCAGGTCTTCTTGAAGCTCAGCCTTTA
CACTTAACTAGTAGGCCATCTCTTCAGTCTCTCAACTTCCCTTTATTTTT
TTTAATCTTAGATTTTGGAAAAATATTATTTTATTTTATGGCTATGATTA
TGTGCCTTCTCATCCATGTGTATGCCAGATGGCTGAAATGGCCAGGTGAG
ACTTCTAACCCTCTTGGAACAAAATACTGGGAAATTGAAAGGGCCCTGTG
GAAGCCGGCATCCAAACCATGGCCCCCTGCCAAACACAAGGGGTCTTATA
TGTGTAGCCTCTTTATTCTCTTGTGGTGTCCCCGGACCCGGTCCCATCAA
AATATN

GTTATGCTCTGCTGGGCCTTCACCTCCCTTACTTCCTTCCTTTTCCCCTT
TTCCTTGTGCCCTCATCTTCTTCTCATGAATAGTGGGGGTAGGGTCCTTG
GGCCCGTGTCCCCGGCTCCTGGGNTTTCTTTTCCCCGCAAACAAATTTTG
TTTCTTAAAAGTGGGCCCCGGGGGTTTAATACCACCACCCCTCCCTTAAT
AAAACTACTCTCTTAAAGACTCTGCTTCAAACAAAAAAAGATGCGTATTC
CCCGCCGGCAACTTCCAGGGGGAAGGATGGTTCCCCTTGAGAACCCCCCC
CCTCCTAAGAAAAGAAAAATTCCATCCCAAACCTTTCCAAGGGCCCCCCC
ACCGGGGCCGGGCGCGGGGAAAACCCTCGGGAGTAATTCCCCAAAAAGGG
GCCCCCCACATAAAAAAAAGGGGGGGTGTTAGGCGCCAAAAAAAACTATA
CCTCTTCTAACAAACAAACGCGGCATCCCATAACTCTAAAGTCATCGGTT
TTCCCCCTCGTCACTCATATTCCCCTCCTTCTTCCTTTCTTCCTTCCTTA
CTCCACATTTTAGCCCTTTCTTCTTATCCCCCCCGCCTCGCAATATATTT
ATCCCGCCTCAGCTGCTTTCCCCCGTCTATATTAAAGCTGAAACGATACA
CCTTAATACCCCCCTCCCCCCCCCCCATATTTGCTTCTCTTGTCTATTTG
CGTTAACCCCTTACGCACGTAGAGTATTTATTATATCTCCGCCCCTATTT
CGGATCTTTCCCTCCATATACCTATTTATATCCCCGTTTATAATACAATT
ACAACCGCATACTCTGATGCTCCCCCCAATATAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_e19.b1 MSMg01no439_e19.b1 CHROMAT_FILE:
MSMg01no439_e19.b1 PHD_FILE: MSMg01no439_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:23 2005
         (439 letters)



>mm_chr12_28843054_28843892
          Length = 839

 Score =  849 bits (439), Expect = 0.0
 Identities = 439/439 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacactttatggtcaaacacttgtgtttgtacgtagttggtgacattcgtgagcctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacactttatggtcaaacacttgtgtttgtacgtagttggtgacattcgtgagcctcttc 260

                                                                       
Query: 61  tgcctcagcttccacttctgcaggatggagacaacttcaaggtagtgagtctgaactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctcagcttccacttctgcaggatggagacaacttcaaggtagtgagtctgaactgga 320

                                                                       
Query: 121 acatggctaggtttaaagggtccgtatgcagaagaatgtgtgctgtcagaggaacaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatggctaggtttaaagggtccgtatgcagaagaatgtgtgctgtcagaggaacaggtc 380

                                                                       
Query: 181 tcccacactgacatctctacacaaacagcacagttacagcacttgtaactagggtttggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccacactgacatctctacacaaacagcacagttacagcacttgtaactagggtttggc 440

                                                                       
Query: 241 tacatgtatgtgtgtggacctcatgcacacagtatccaaggaggtcagaagagagaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatgtatgtgtgtggacctcatgcacacagtatccaaggaggtcagaagagagaattg 500

                                                                       
Query: 301 gatcccctggaactgaagaggatgatgtgagctgccatgttggttctgaaagcaaaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcccctggaactgaagaggatgatgtgagctgccatgttggttctgaaagcaaaactc 560

                                                                       
Query: 361 aggtcttcttgaagctcagcctttacacttaactagtaggccatctcttcagtctctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtcttcttgaagctcagcctttacacttaactagtaggccatctcttcagtctctcaa 620

                              
Query: 421 cttccctttatttttttta 439
           |||||||||||||||||||
Sbjct: 621 cttccctttatttttttta 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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