BAC Information

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BAC

Clone NameMSMg01-440F13
Chromosome12 (Build37)
Map Location 28,679,130 - 28,679,318
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440F13.T7 (MSMg01no440_f13.b1)MSMg01-440F13.TJ (MSMg01no440_f13.g1)
ACCAG530485AG530486
length1,006763
length of high quality
(start - end)
---189 (81 - 269)
definitionCHROMAT_FILE: MSMg01no440_f13.b1 PHD_FILE: MSMg01no440_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:46 2005CHROMAT_FILE: MSMg01no440_f13.g1 PHD_FILE: MSMg01no440_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTGTTGTTTGGGCNGCGNCCAGAAAAGGGGGAGNATAACATTACCCGA
GACGGGGGGAGGNGGTTTTTCCCCCAAAAAAGTNGTAAGGANAGTAATGA
GAATTAAATGTTGTAGTGTTATGGTGTTTTCCCCTCTCCAAACACCCGAC
TGCCACGAGGCAACGACACTACTACAATCCACCCCCACACCAGCCAAGTC
GCCTACAACTTACCGATTATCAGTCATCTTGGTAGCAGGATAGTCTCTAG
GACCATAAGACAACTCACCTCACACGCTAAAGGCTCAGACTCTTGTGTTC
GCTGTTTAGTCATTCTCTGGCCGCGGGAGAGCTTCGCCTCCGAAGACCAA
CCAGGCGACGGAGCGTGGCAACCCGCCCATGCTCTGTTTTCTTTTGTCGC
GCCCTCTGGCGGACGCTGCTGCCCTCCCCCCCCTCCCGCCACCGTATCAC
AGATCATAACGTCTGAACGAGAACGCCGCGCAGGTCGCCTAGCGCTCATA
ATATGAGAACCGGCGCCGACGACCACGTCCACCGCCACACATCGATCGGA
GGACGGAGCCTCACCGCCATCCTTCACCTGCCCCGTCGCCCACCGGANAC
TATGACACCCCTCCCATTACTGATGAATCCCCACATATCCCTCCTCGCAA
CCAGTCTAACACCCTCAACACACGCACGCCCCTGCCGGCCACTCCCCGCC
TCTAATGCAACAAAGCACGCTCTCAAAGCGACACCCACTGCCTCACTTAT
GTCATCACGAACACACTTCACCTGNGCAACGGATACCAACCGTCAGACCG
AACTACTTATGTCTAATATCATAAGACGTCGCCGTGTACGAGGATCCGAT
TCACCATACTCACCTCNCACCCACGCACCGCCTCTATATCCCCCCACACG
CTCTCCCAGACACTATCACACACATCCACGACCAAGAACTCATCCTTCCC
TCTACCTCACTACCAATATTCGTCATTCAGATAGAGTAGCCTAGATATGA
TATGAG
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCAATACCTTTACATTT
TGTGCACAAAAATATCTATTTGATTTCCTCACTGCTCAGCACGGATTTGC
CAACTCCGACTTCATGGACAAGATCAAGGTTGTGAAGCTTCCTCTGGAAG
AGTGAGGCTCTGTTACCAAGGAGCAGCCTGTANAAGTGAAGAAAGTCATT
CTCTTATGGGACTAATAGAATGGGCTACAGGAGGNAGAAGAAATTANAAA
AGATATCTGTGGTTCCAAAGCCTTGTTCTTAACAGCATCATTTCCAGGAA
AATCCGGTCAACTCCCAAGCCCGGGGGGGGTTCCAAAGGCCCTTTTCCCA
CCATTCTCNNNNNNNNCTTNNNGGTAAACCCCCNNNNNNNACCAATCAAA
GNNNNNNNNGGGGGCTCCTTTTCTCGTTTTTTGNNNNNCCCCCCNGTATT
TAACCCNNNNNNNNNNNCTNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGACTGGNNCTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTGAAGAAAA
AAAAGAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_f13.g1 MSMg01no440_f13.g1 CHROMAT_FILE:
MSMg01no440_f13.g1 PHD_FILE: MSMg01no440_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:46 2005
         (189 letters)



>mm_chr12_28678930_28679518
          Length = 589

 Score =  360 bits (186), Expect = e-104
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcaatacctttacattttgtgcacaaaaatatctatttgatttcctcactgctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctagcaatacctttacattttgtgcacaaaaatatctatttgatttcctcactgctcagc 330

                                                                       
Query: 61  acggatttgccaactccgacttcatggacaagatcaaggttgtgaagcttcctctggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acggatttgccaactccgacttcatggacaagatcaaggttgtgaagcttcctctggaag 270

                                                                       
Query: 121 agtgaggctctgttaccaaggagcagcctgtanaagtgaagaaagtcattctcttatggg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 agtgaggctctgttaccaaggagcagcctgtagaagtgaagaaagtcattctcttatggg 210

                    
Query: 181 actaataga 189
           |||||||||
Sbjct: 209 actaataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)