Query= MSMg01no440_k20.b1 MSMg01no440_k20.b1 CHROMAT_FILE:
MSMg01no440_k20.b1 PHD_FILE: MSMg01no440_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:13 2005
(524 letters)
>mm_chr12_8169379_8170302
Length = 924
Score = 922 bits (477), Expect = 0.0
Identities = 517/541 (95%), Gaps = 17/541 (3%)
Strand = Plus / Minus
Query: 1 aacaaaactcagataagaaataagcaaactctaatttcagtgacagcatatatgttctgg 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 744 aacaaaactcagataagaaataaggaaactctaatttcagtgacagcatatatgatctgg 685
Query: 61 ctagacttgttctagtgttgttgttttggcattttgggatttgaagctaactccatagac 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctagacctgttctagtgttgttgttttggcattttgggatttgaagctaactccatagac 625
Query: 121 acctga-----------------gcaatcattttacatgactttacctaaggcaaacgtt 163
|||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct: 624 acctgagcagtttatacatcattgcaatcattttacatgactctacttaaggcaaacgtt 565
Query: 164 gttctatgagcttatttgcaatcttaaattctccaaacatcactcaaagttctgttatac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttctatgagcttatttgcaatcttaaattctccaaacatcactcaaagttctgttatac 505
Query: 224 tctgtagtttgtttttaaatgttttagatgagctgttgtttaaaagagatctgactgggg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgtagtttgtttttaaatgttttagatgagctgttgtttaaaagagatctgactgggg 445
Query: 284 caatgggataagggagccttttaagaggaggtgaaatgacaaagggcaaaatagcagtaa 343
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 caatgggataagggagccttttaagaggaggtggaatgacaaagggcaaaatagcagtaa 385
Query: 344 ggatagctggaaaaaagtcataaggaatcatactattaactatctgaaatgcctataata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggatagctggaaaaaagtcataaggaatcatactattaactatctgaaatgcctataata 325
Query: 404 catataattatgtgtataaatatacacatatagtttaaatgaataatttcatctgagctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catataattatgtgtataaatatacacatatagtttaaatgaataatttcatctgagctg 265
Query: 464 acaatactccctctaatagacaaattctacctaacaaaatgcccaataccaggcatgaga 523
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 acaatactccctctaatagacaaattctacctaacaaaatgcccaacaccaggcatgaga 205
Query: 524 a 524
|
Sbjct: 204 a 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_k20.g1 MSMg01no440_k20.g1 CHROMAT_FILE:
MSMg01no440_k20.g1 PHD_FILE: MSMg01no440_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:13 2005
(507 letters)
>mm_chr12_8002552_8003458
Length = 907
Score = 911 bits (471), Expect = 0.0
Identities = 495/503 (98%)
Strand = Plus / Plus
Query: 1 cactttgaatggtatcctcagcgcatttgtttccttgcttggaaataacacttaattgcc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cactttgaatggtatcctcagcgcattcgtttccttgcttggaaataacacttaattgcc 260
Query: 61 tcgtttgtatcaattttgttgaaggagatgcacaaggaccctgatcctccagattttaat 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tcgtttgtatcaattttgttgaaggagacgcacaaggaccctgatcctccagattttaat 320
Query: 121 tctccaaggaaggcatgcacttaaggagatgacagtaatgagtcacaggctggttgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccaaggaaggcatgcacttaaggagatgacagtaatgagtcacaggctggttgagag 380
Query: 181 gaagagtagtatactttgaaatgaagcctatgagagtcagaatgctttctaaaagcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagagtagtatactttgaaatgaagcctatgagagtcagaatgctttctaaaagcctat 440
Query: 241 gtcagagttactcatgcaaaggagaaagggagtgtgcgtccgtgcaaggagtacagtatt 300
|||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 441 gtcagagttactcaagcaaaggagaaagggagtgcgcgtccatgcaaggagtacagtatt 500
Query: 301 tgtaatggcctcaaagataaagaaaatggctgaaagagctaagacgagctgagttagtaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tgtaatggcctcaaagataaagaaaatggctgaaagagctaagatgagctgagttagtaa 560
Query: 361 agaacacaggaagcatatggaagctatagtgggaaaggggagtccatcttggaccatgac 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 agaacacaggaagcatatggaagctatagtgggaaaggggagtccatcctggaccatgac 620
Query: 421 taagtccctggaaagcatgtggactcttctgaagccaaaggaattgagaagtataattag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagtccctggaaagcatgtggactcttctgaagccaaaggaattgagaagtataattag 680
Query: 481 gatgagctaggggagcataaaag 503
||||||||||||||||| |||||
Sbjct: 681 gatgagctaggggagcaaaaaag 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
