BAC Information

Click to search

BAC

Clone NameMSMg01-441G03
Chromosome12 (Build37)
Map Location 83,759,405 - 83,759,863
singlet/doubletsinglet
Overlap geneRgs6
Upstream geneTtc9, LOC100041821, Map3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G03.T7 (MSMg01no441_g03.b1)MSMg01-441G03.TJ (MSMg01no441_g03.g1)
ACCAG531277AG531278
length752767
length of high quality
(start - end)
459 (70 - 528)138 (81 - 218)
definitionCHROMAT_FILE: MSMg01no441_g03.b1 PHD_FILE: MSMg01no441_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:08 2005CHROMAT_FILE: MSMg01no441_g03.g1 PHD_FILE: MSMg01no441_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAAGCTCACTCATCAAAAGCTTTGTCCATTTTCTGCGTT
GACCCGGCTGGCACGCTCACGGCCTTTTAAAGGAATCCTCCTCTTCTATC
CCCGTGATTTTAAACATTTATTTTCCTTTCACACATACCCATTCACTTTC
AACTTTCCTTGTTCAAAACTGTGCCAATCGGGGATTGACAGCCCTGCGAG
TGCTCCATCGAGTAATACGGCAGAGGGCTGTCAATGGCAAGATAAACTGT
CAGCCAGAGAGTAAAATCTCAGACTGTTTGAAGTGAAATGAGGAGGGGAA
TGGGAAGATGAAATGGAGTCTTGAGCACATCGAAGGCGTCTCAAATTAGA
AAATTCTAGCCATGGCAACACATCCCATTAAACCACACTGAGCCGGGCCC
CAACATGGAAACTCATCTCTTTCATCTGTGGACACTAAGGCCGACACTGT
GGATCGGGGACTTTGCCTGCATGTCTCTGGNCCTGACAAACAAGAGATGG
AATGTGAGGCTGCACTCCCAGTAAGCCTGCCGCAAGGAAGGAAGAAAAAA
TGAAAGAACCCTTTTCCTCCTAGGCATAAAAAATATTTTTTGCAAATGTA
TGTATTTTTTTTTGAAGTGGGCGCGGACCCATTTTCAAAGTTACTCTAAA
GCCCCACCCTGTATTTAACCTCTGATAAACCACATCTTGGCGCGGTCGCC
TG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCTCAGTGGGGAATGA
GCTTGTGTGAATGAGGACCTGGATTCCATCCCCAGCACTCAGAAAGCTGG
GGGAGGTGCCTCAAGTCTATAACCTCAGTGCTGGGGAGTGGGGACAGAGA
TGAGATGGGGGAGGGGATTNNNNNNNNNNNNNNNNTNTNNNTTNNNNNGN
NNTTTTTTTTTTNNNNNNNTNTNTNNNTTTTTTTTTTTTTTTTTNNTTTT
TTTTNNTTTNNNNNNNNNTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTTTTTTCTCCCTCCCCCTCTGTCTTCTCTTTCTCTC
TTGTCCCCCCCTTTCCCCCTTTTTTCCTTCGCTTTTTTCCGTCTCCCCTT
CCTTTCCTCCTCCCCTCTTCCCTTCTTTTTTTTCCTCTCTTCTTTTTTTT
TTCGCTCTCCTTCGTTTCGTCCTGCGTGCCCCCCTCCTCCTGTTTTTGCT
CTTTTTGTTTCTTCTTCTTTTTTTTTTTTCTGTCCCTCCGCCTCTTTCCC
TTCTCTCTTTTTTTTCCCCTTTTTTTCCCCCGCCTCCCTTTTTGTTTCGC
GCCTCCTCTTTTTTTTTCCCTTTTCCTTCTTTTTTCTCCTTCTTTCCCTT
GCTGTGTTCTCCCCCCTTCCCCCGTCCGCCCGCTCCCCGTTTTTCTTCCC
TCTCTCTTTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g03.b1 MSMg01no441_g03.b1 CHROMAT_FILE:
MSMg01no441_g03.b1 PHD_FILE: MSMg01no441_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:08 2005
         (459 letters)



>mm_chr12_83759205_83760063
          Length = 859

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatcaaaagctttgtccattttctgcgttgacccggctggcacgctcacggcctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctcatcaaaagctttgtccattttctgcgttgacccggctggcacgctcacggcctttta 600

                                                                       
Query: 61  aaggaatcctcctcttctatccccgtgattttaaacatttattttcctttcacacatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaggaatcctcctcttctatccccgtgattttaaacatttattttcctttcacacatacc 540

                                                                       
Query: 121 cattcactttcaactttccttgttcaaaactgtgccaatcggggattgacagccctgcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cattcactttcaactttccttgttcaaaactgtgccaatcggggattgacagccctgcga 480

                                                                       
Query: 181 gtgctccatcgagtaatacggcagagggctgtcaatggcaagataaactgtcagccagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgctccatcgagtaatacggcagagggctgtcaatggcaagataaactgtcagccagag 420

                                                                       
Query: 241 agtaaaatctcagactgtttgaagtgaaatgaggaggggaatgggaagatgaaatggagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agtaaaatctcagactgtttgaagtgaaatgaggaggggaatgggaagatgaaatggagt 360

                                                                       
Query: 301 cttgagcacatcgaaggcgtctcaaattagaaaattctagccatggcaacacatcccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cttgagcacatcgaaggcgtctcaaattagaaaattctagccatggcaacacatcccatt 300

                                                                       
Query: 361 aaaccacactgagccgggccccaacatggaaactcatctctttcatctgtggacactaag 420
           |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||
Sbjct: 299 aaaccacactgagccgggccccgatgtggaaactcatctctttcatctgtggacactaag 240

                                                  
Query: 421 gccgacactgtggatcggggactttgcctgcatgtctct 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gccgacactgtggatcggggactttgcctgcatgtctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)