BAC Information

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BAC

Clone NameMSMg01-441O02
Chromosome12 (Build37)
Map Location 56,172,753 - 56,173,306
singlet/doubletsinglet
Overlap gene2700097O09Rik
Upstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, LOC665144, EG665137
Downstream geneSrp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441O02.T7 (MSMg01no441_o02.b1)MSMg01-441O02.TJ (MSMg01no441_o02.g1)
ACCAG531659AG531660
length753757
length of high quality
(start - end)
558 (49 - 606)607 (79 - 685)
definitionCHROMAT_FILE: MSMg01no441_o02.b1 PHD_FILE: MSMg01no441_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:50 2005CHROMAT_FILE: MSMg01no441_o02.g1 PHD_FILE: MSMg01no441_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTTATTATCAGATGATGTTATACTAAGAAACTACATTTAC
TGAGCTAGGCTTGGTGGCACACAGCTGTGAGTCTATCTATTCCAGAGGAT
TTCCTGAACCCAGGAGTTCATGGCTGGCCTGGGGCAATATAATCAAACTG
TTGGGGGGGGGGGAATCTGCTGCTGAAACATTATCCTTCAAAAAATTATG
ATTTTGAGAAAGGTTCTCAACATGTAGCTCTAGCTGGTCTGAAAGTTATG
CTGTGGAACTGGTTGACCTTGAACTCACAGAGATCTGGCTACCTCTGCCT
TCTGAATGCTAGGAATCAAGGAAATGCACCATGGTGTCCATTTTACAAAG
ATGTTAAATTACATTTAACTTGTTGGTGCATGTGTGTGTGTCTCTGTGTG
TGTACTTTTGTGGTAGAAAGGCATGCAAGGACTCCATCAGCTCTGACTGT
TTTCTTACTCAAGTACTAAGACATGGTGAAGGGTTTTGCAATGTACTTTC
CAATTTTCTGAATGATTTTACTAAACTGCCCTGACAGAGGAGTAAGAATG
GGTGGTCTTCGTTCAGTGCAGCGGCATCTAACCTGCCTTTAATCCCAGCA
CACCTCTTTCTACCCTCCCTTCCTACTGGGGGGAGGCTAAGGCAGGAGGG
CCACAAATTCAAGAACAGCCTGGAACAAACACGCAAATCTCAGCTCCAAA
AAG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTACTGGTGAGGAATTTGC
CACAGCACACATGTGGGGGCCAGAGGACAGCTTTGTGGGCGAGGTCCTCT
CCTTCTATTGAAAGAAAATAAAATGAGACCTGTGATTCATGTAATTTATG
TCAAATAGCCCAAAGAGTTGTTTGTGAGCTTTGAAACCTGGGGCTGAGAA
CATAGCAGAACAGGCCAGAACATGCACGGGCAGGCCAGTCATTGAGACAT
TCCTGAGGCTGCTTAGCCATAAAGAATGATAATGACATGCGCCTCCCTAT
CTCCCACCCTTTTGACAGTCTGCTAATGTTTAAATGAACCAATCATGTGA
AACCGCGCCAATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGAATC
CACGCCAATCCCTCCCCCAGCCCCAGCCCCTTTTCTATAAAAACCCCTAG
CTTCCAAGGCTTGGGATCGGAAACCACTGTCTCCTGCATGAGATACGTTT
AGATCTGGAGATCCACCATTAAACTACCTCGTGTTTTTGCATCAAGATGG
TCATCTGTTCGTGATTCTTGGGTGCACGCCAAATTGGGAATTGAGTGGGG
GTTTCCCCACTAGGTTCTTTCACTATCATTATGTGGGATCTGGGGAATGA
ACTTGGGTTGCCAAGCTGGTGTTTAAATGAGTGGGGCTAACACCTCGTCT
ATAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_o02.b1 MSMg01no441_o02.b1 CHROMAT_FILE:
MSMg01no441_o02.b1 PHD_FILE: MSMg01no441_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:50 2005
         (558 letters)



>mm_chr12_56172549_56173506
          Length = 958

 Score = 1017 bits (526), Expect = 0.0
 Identities = 547/554 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttattatcagatgatgttatactaagaaactacatttactgagctaggctt 64
           |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcactttaatattagatgatgttatactaagaaactaaatttactgagctaggctt 264

                                                                       
Query: 65  ggtggcacacagctgtgagtctatctattccagaggatttcctgaacccaggagttcatg 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtggcacacagctgtgagtctagctattccagaggatttcctgaacccaggagttcatg 324

                                                                       
Query: 125 gctggcctggggcaatataatcaaactgttgggggggggggaatctgctgctgaaacatt 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 gctggcctggggcaatataatcaaactgttgggggggggagaatctgctgctgaaacatt 384

                                                                       
Query: 185 atccttcaaaaaattatgattttgagaaaggttctcaacatgtagctctagctggtctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccttcaaaaaattatgattttgagaaaggttctcaacatgtagctctagctggtctga 444

                                                                       
Query: 245 aagttatgctgtggaactggttgaccttgaactcacagagatctggctacctctgccttc 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagttatgctgtggaactggatgaccttgaactcacagagatctggctacctctgccttc 504

                                                                       
Query: 305 tgaatgctaggaatcaaggaaatgcaccatggtgtccattttacaaagatgttaaattac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaatgctaggaatcaaggaaatgcaccatggtgtccattttacaaagatgttaaattac 564

                                                                       
Query: 365 atttaacttgttggtgcatgtgtgtgtgtctctgtgtgtgtacttttgtggtagaaaggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttaacttgttggtgcatgtgtgtgtgtctctgtgtgtgtacttttgtggtagaaaggc 624

                                                                       
Query: 425 atgcaaggactccatcagctctgactgttttcttactcaagtactaagacatggtgaagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgcaaggactccatcagctctgactgttttcttactcaagtactaagacatggtgaagg 684

                                                                       
Query: 485 gttttgcaatgtactttccaattttctgaatgattttactaaactgccctgacagaggag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttttgcaatgtactttccaattttctgaatgattttactaaactgccctgacagaggag 744

                         
Query: 545 taagaatgggtggt 558
           |||| |||||||||
Sbjct: 745 taaggatgggtggt 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)