BAC Information

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BAC

Clone NameMSMg01-442J23
Chromosome12 (Build37)
Map Location 95,995,978 - 95,996,226
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442J23.T7 (MSMg01no442_j23.b1)MSMg01-442J23.TJ (MSMg01no442_j23.g1)
ACCAG532225AG532226
length804789
length of high quality
(start - end)
249 (78 - 326)333 (79 - 411)
definitionCHROMAT_FILE: MSMg01no442_j23.b1 PHD_FILE: MSMg01no442_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:52 2005CHROMAT_FILE: MSMg01no442_j23.g1 PHD_FILE: MSMg01no442_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGTGCATTGCCCAAGAGTAATCTCCCCAAACATACTGACAC
ATGGCACCATGTAGACACAGCTGGAACACACGTTCATCAATATCCAACTA
ACAGTTTCCACTAGAATACTCTTGCGGACAGACACATATGTTTCTTCCTA
TCTTATTAAGGCATACTGCCTCATTCATGCAGGGATCAGAAACACATTAA
TTCACTTCCAATTTGCAATGCTTGTCTTGGTATCCAGGCACACTGAAGCA
GAAATAACCATTAGTTACAGCCTACTGTTTTGCAACATTATGGTAAGATC
AAGAACCACACTCATTATGATCGGTCTCACAGAATCTTCCAGCTTGTTCA
ACAGGGAAGATAGAGGCAGGGTGTTCAGAGTCTCTATGGTAGGAGCCTCA
ACATTGGCAGGTGTCTCCTCCAAAGGAGTTAGGGACAGCTTTACCGTTCA
GTCCTCTGGTCCTAGGAGGAATTCGGCACCAAAAGTCCCTATCTTCTGGG
TGTTCCCACCCGCGGCTTTTCTGGGGGATTTTGCGTTTACTTTTATTACC
TTCCTTTTTTGGTTACCATTCCAGGGTGCGCCTCCTGCCTTCTCCCCTTC
TAATCTTTTATCCTCGCCCGCGCGTTTTTTTTCCCCCCTCTCCTTCCCAT
ATCCCTCACTTTCCCCCTCCCTTTTTATCTCCCTTTTTCCCCCCTCTTTC
TTTTTCTCTCCCGCCCTCTTTATTTTTTCTTCTTCTCCTCCCCCCCTCCC
CCTN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTAACAGCAATTGAGTAAT
AACCACTCTATATGTCATGCCCACGTTAATTCTCCCCTACTTAGCATATT
TTCAAGTAGACTACTGTAAGTGAACACCTGTGTTCACTCATATGAGTTCA
ATGTTGCTTGCTTTTAATTTTACATGGAGATTTTGCAGTGAGAATTTTTG
TTTCTTTCAGAAACACAGAAATATAGGAAAATGCTTTGGTTTTAACCCGA
GGTGTGGGATATGGGGCTGCTTCAGATTGTTTATAGCAGCTATGATTTGT
GTCATGTTCTAGTAGGTATGTGATTTTCCCAGTACTGGGCAGTTTCTACA
ATTGTGTACCATTTGGAATTCTGGAGAATTTTAAAAAAGTATATAAATTT
CCCTAGCCCCATTCCCACCCCCACCTGCTGGTGTTATCACCAATTGGCAC
ATCCCCTCCTGGAAACCTTTATGTGTTGTTTTCCCCCCTTGTTTCTTTCA
CCTGGTTCACCTTTTGTTGTTCTTTTTCCTCCACTTTTGCTTTTTTTCTC
CTTCTCCTTCTTTCTCCCCCTCACTATTTCTTTTCCGTACCTTTTTCTCC
CTTTCGTTCCTTACATTTCTCTTTTTTTTTTCTTTTTTTTCTCCTCTCTT
TTTCCCTTTATGATTCACTTCTTTTTTCTTATTTCCTTCTCCCCCCCTCC
TCTCCTCTTCCTTCTTTTCCTCCCTCTTTCCTCCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_j23.b1 MSMg01no442_j23.b1 CHROMAT_FILE:
MSMg01no442_j23.b1 PHD_FILE: MSMg01no442_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:52 2005
         (249 letters)



>mm_chr12_95995778_95996426
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctccccaaacatactgacacatggcaccatgtagacacagctggaacacacgttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatctccccaaacatactgacacatggcaccatgtagacacagctggaacacacgttcat 390

                                                                       
Query: 61  caatatccaactaacagtttccactagaatactcttgcggacagacacatatgtttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caatatccaactaacagtttccactagaatactcttgcggacagacacatatgtttcttc 330

                                                                       
Query: 121 ctatcttattaaggcatactgcctcattcatgcagggatcagaaacacattaattcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctatcttattaaggcatactgcctcattcatgcagggatcagaaacacattaattcactt 270

                                                                       
Query: 181 ccaatttgcaatgcttgtcttggtatccaggcacactgaagcagaaataaccattagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccaatttgcaatgcttgtcttggtatccaggcacactgaagcagaaataaccattagtta 210

                    
Query: 241 cagcctact 249
           |||||||||
Sbjct: 209 cagcctact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)