BAC Information

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BAC

Clone NameMSMg01-443C22
Chromosome12 (Build37)
Map Location 94,711,187 - 94,711,610
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443C22.T7 (MSMg01no443_c22.b1)MSMg01-443C22.TJ (MSMg01no443_c22.g1)
ACCAG532650AG532651
length734485
length of high quality
(start - end)
429 (75 - 503)336 (91 - 426)
definitionCHROMAT_FILE: MSMg01no443_c22.b1 PHD_FILE: MSMg01no443_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005CHROMAT_FILE: MSMg01no443_c22.g1 PHD_FILE: MSMg01no443_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTCACCGTTTACTCACATGCTTGTTAGCAATCACACCTC
ATATGAATATAAGTAATTCAGATGCTGAGAGCAGTAATTGAAGAAAACAG
TACATTCTATGAAACAACCATATAGTTTTTTTTTTTAAATTAATCATTGT
AATTATGCTTACAATAAAAAATTATAAGGGCACAGACATGTATTTATACA
TCATGTTTTTATTCTTTAATCATTTTTTTCTTTACAGTTCGGTCCTTTTT
GCCCTCCTGGTCTGCCCTCTGGCTGTTCCTCGTCCCATATCTCTTCCCCA
ATCTCATCTCACCAGACCTGTCCATTCCTTGGGGCCTCAAGTCTATTGAT
GGTTAGGCACATCTTCTTTACTGAATCCAGATCAGGCCGTCCTCTGCTGT
ATATGTGTTGGGAACCTCATATCAGCTGGTGTATGCTGCCTGGTTGGTGG
CTCAGTGTCTGAGAGATCTCAGGGGTCCAGATTAGTTGAAACTGCTGATC
TTCCTATTTATACCTTTTAAAGATACAGATAGTTGGGGGACATAAAGTAC
CTGGGGAAAAAGACATTGGGAAATGTGCAAAATTTGCGAAGGTCATCACT
CATTCACAACTCAAAACCCCTTCTCCACCCGGAAGCCTTTTTTTAATTAC
ACACCCCTTGCCCTTGAAGGGAAAATTTGGCCCA
NNGGTGCCCCCNTNCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTC
ACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGGCAAGCAACGAATCG
GGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGCTGCAGGTTATAA
AAGCAGCGCCATTTTCCCGGTTCGGAATCTTCCTGAGAAACAAGCAATAA
AGCTCTTGCCGGGGAAGATTCTGGTTTGTTGTGTCTTTCTTGCCGGTCTA
GCAGGACGCAATAAGTTGGGAAAATGCCTCCAGGAGATCCAGCTGTAAGG
CATTTTCTCAATTAGTGATCAATGGGGAAAGACCTCTTGTGGATGGGACC
ATCCCTGGGCTGGTAGCCTTGGGTTCTATAAGAGAGCAGGCTGAGCCAGC
CAGGGGAAGCAAGCCAGTAAGTAACATTCCTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_c22.b1 MSMg01no443_c22.b1 CHROMAT_FILE:
MSMg01no443_c22.b1 PHD_FILE: MSMg01no443_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:42 2005
         (429 letters)



>mm_chr12_94711187_94712012
          Length = 826

 Score =  733 bits (379), Expect = 0.0
 Identities = 414/429 (96%), Gaps = 7/429 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatgcttgttagcaatcacacctcatatgaatataagtaattcagatgctgagagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 424 cacatgcttgttagcaatcacacctcatatgaatataagtaattcagatgccgagagcag 365

                                                                       
Query: 61  taattgaagaaaacagtacattctatgaaacaaccatatagttttttttttt--aaatta 118
           ||||||||||||||||||||||||||||||||||| |||||     ||||||  ||||||
Sbjct: 364 taattgaagaaaacagtacattctatgaaacaaccttatag-----ttttttaaaaatta 310

                                                                       
Query: 119 atcattgtaattatgcttacaataaaaaattataagggcacagacatgtatttatacatc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcattgtaattatgcttacaataaaaaattataagggcacagacatgtatttatacatc 250

                                                                       
Query: 179 atgtttttattctttaatcatttttttctttacagttcggtcctttttgccctcctggtc 238
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtgtttttattccttaatcatttttttctttacagttcggtcctttttgccctcctggtc 190

                                                                       
Query: 239 tgccctctggctgttcctcgtcccatatctcttccccaatctcatctcaccagacctgtc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgccctctggctgttcctcgtcccatatctcttccccaatctcatctcaccagacctgtc 130

                                                                       
Query: 299 cattccttggggcctcaagtctattgatggttaggcacatcttctttactgaatccagat 358
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 129 cattccttggggcctcaagtcttttgagggttaggcacatcttctttactgaatccagat 70

                                                                       
Query: 359 caggccgtcctctgctgtatatgtgttgggaacctcatatcagctggtgtatgctgcctg 418
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  caggcagtcctcttctgtatatgtgttgggaacctcatatcagctggtgtatgctgcctg 10

                    
Query: 419 gttggtggc 427
           |||||||||
Sbjct: 9   gttggtggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 826
Length adjustment: 9
Effective length of query: 420
Effective length of database: 817
Effective search space:   343140
Effective search space used:   343140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)