BAC Information

Click to search

BAC

Clone NameMSMg01-443N11
Chromosome12 (Build37)
Map Location 58,863,599 - 58,863,838
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443N11.T7 (MSMg01no443_n11.b1)MSMg01-443N11.TJ (MSMg01no443_n11.g1)
ACCAG533151AG533152
length759785
length of high quality
(start - end)
246 (73 - 318)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no443_n11.b1 PHD_FILE: MSMg01no443_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:33 2005CHROMAT_FILE: MSMg01no443_n11.g1 PHD_FILE: MSMg01no443_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGAACACCG
CGGAATTCTTCTGATCCCGGAGATGAGGAGGTACATGAAACAGACAAATA
GACTGAGAGTATATGTGTAGAGAATGGTATCACCTCAGGACACCCCAAAA
CCAAGTTTTCAGTGCAAAGGATATTCACTTGCCCCGAAGGAACAAGAGCA
GGGCAAGACAGGAGATAGAGGAGAAGGGAGACATATTTGTCAGCCCCTAA
AGGATGGTGGGGGATGATTGACAAGAAAGGACTGCTTTTAGATAGAGAGG
AAACAGATGCAGCCCATAGGTTATTGTTGGTTTATAAAGTAAAAGGGTAA
ACCCCATGTTACTATGAAGTGGTTAATTTTAACTGGGCATGTTAGCTACA
TGAGTCAAAGGGGGCTTTTTACTGCTGGAATTCAATACTTTGATAGCTGG
ACCTTGGTGGGCTGCCTCAGGAAGAGGACATACTCCCATAAGGGCACAGA
CCTCTGTGCCTAGCTTTAGGAATATCATCTAACAGTTTTTATCAGGTTAT
AATATTTGCTTTGCCTTGTTCTTGTTGGCAATATTTTTTTTTTTTGTGCC
CCGTGGTGGGTTACTATTATTACACACATATTTTCTCGGCACTATCTTAT
TTGATCCAATTTTCCCCCATCTTTCACTCTTTTTTCCCTCACAAAAATTT
TCTCCCATGCCCTTTTGTAATTTTCTTTTCCCAATAACTTATCCACCCGT
TACTCTGCC
TTCTTCGAAGCTCCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAATGTAAGGGCAACATGTT
ACCAAGTCTCTGACTATTGCTGATTACAGAGGGAAAGTTTTCTGCTCTGT
TTGTACAGTGTTTCTGGGACTAGCAGTTCTACTCAGGCCTAACCCTGGAG
GTGAACAGAAACAGAAATACGGGCTCGTAGGCCCCACTGGGAGCCCCTGA
GTGAGACTCTGAAGGTACTCAGTTCCAGTACCAGTTCTCAGGATCACTAA
AGTACTGAGAGGAGGTTTCTTTTATTAAAACACAGGATTTAGAAGTGGTG
CTGATTCAGTACTGGATTTTTTGTTTTTGTTTTTGTTAACTTTTTTTTAT
AGGATAGTCTCTTAATAACTGGCGATATAGCTAGGAGGACAATTTTTGTA
TCCACCTCCAATGCTTTCATTAAAGGAGTTTTTTTGCCCCGCCCCATTCT
ATTTCTACAACTTTCTTTTTTTTCTCCCTTATCCTTCCGTCCGATATTAC
TGAATGTGCCTTTTTTTTTTCTCTGACCGCTTTTCACCTTCACGTATCTT
TACCCTCTCCCCTTTCAGTTTTATCTTGCCGTGCCATTTTTTTCTTCCTT
GTTACTATTCCTCTCTTTCTCCTTTTACACCATCCTTCCCCACCCTCACT
CTCTCTTATTCCCCCTCCTCTCTGTTCCATTTCCTCGTTTTTTTTCTCCT
CCCTTTCCGCGTCCCTGCCTTCTTACTCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_n11.g1 MSMg01no443_n11.g1 CHROMAT_FILE:
MSMg01no443_n11.g1 PHD_FILE: MSMg01no443_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:34 2005
         (240 letters)



>mm_chr12_58863399_58864038
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagaatgtaagggcaacatgttaccaagtctctgactattgctgattacagagggaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaatgtaagggcaacatgttaccaagtctctgactattgctgattacagagggaaag 260

                                                                       
Query: 61  ttttctgctctgtttgtacagtgtttctgggactagcagttctactcaggcctaaccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctgctctgtttgtacagtgtttctgggactagcagttctactcaggcctaaccctg 320

                                                                       
Query: 121 gaggtgaacagaaacagaaatacgggctcgtaggccccactgggagcccctgagtgagac 180
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gaggtgaacagaaacagaaatatgggctcgtaggccccactgggagcccctgagcgagac 380

                                                                       
Query: 181 tctgaaggtactcagttccagtaccagttctcaggatcactaaagtactgagaggaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaaggtactcagttccagtaccagttctcaggatcactaaagtactgagaggaggtt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)