BAC Information

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BAC

Clone NameMSMg01-444K05
Chromosome12 (Build37)
Map Location 15,146,328 - 15,146,645
singlet/doubletsinglet
Overlap genenone
Upstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444K05.T7 (MSMg01no444_k05.b1)MSMg01-444K05.TJ (MSMg01no444_k05.g1)
ACCAG533757AG533758
length775732
length of high quality
(start - end)
318 (73 - 390)236 (326 - 561)
definitionCHROMAT_FILE: MSMg01no444_k05.b1 PHD_FILE: MSMg01no444_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:36 2005CHROMAT_FILE: MSMg01no444_k05.g1 PHD_FILE: MSMg01no444_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTCAGGTTTCCGTGTCTGCTTAGCAGCTGCATTATAAGAAAGATC
ATGAATGTGAATTTGGAACACACCCAGATTAATGAAATTATGAAAAATCA
ATATCTTAGATTAATTATGTTAGTACAACTAACTCCTTTTGTGGTCAGGA
CATAACAGAATTGAAGTCCTGTTGAGACAGGGGATGTGTAAGATAAATAT
TAATGGTAAGAGAACACCTTTGAAAATGAACTTCTAAATTCCATTTCTTG
GCTTCTTTTATGAAAGCAAAATGTAAACACATTTTGATGAGACCATGTGT
TCCTCACTATCAACTGGATTGCATTTCTGAATCACTTAGGAGATAAGATA
TCTGTTAGTGTGGCTGGCCACGATGAGCTCGCAAATCCACTTATCTAAGT
GTGTGAAGATCTACCCTGATCGTTTTTTGTACCATTCCCCGATCCTTTGT
TCTACCGCGATCCCTGATTAACCTGCGTCCGACATCATTCCACTTTCCGC
CTTCTCTTTTTGGCACCTTTATGCGTCTTTTCGCCTTTTAAACTTTTCTT
CTTTCCTCCCTCTTTCTTACATTTTCTGCATTTTTCCCCCCTTTTTCTTC
TTTTTTTTCTCTTTTTCCCTTTACCTACGCGTCTTTCTCTTTTTATACTC
GCCCCCACTTTCTTGCTTTTTCCCATTTGAATCATGTCACTTATCCCATC
CACTTTTTCCCCCCCCCCCCCCTCG
NNCCCCGATGATAGGGGAGGCCTGGCGGCCGCCTGGTTTCTGACCTGAGG
TGAACTATAGAAGTACCGCAAAATTCCTATCACAGAACTCCATACTTGGA
CTGTGTTCCAACAGATTATGTTCCATTAAGTCCTGAAAGGTAGACTCCTA
AAGCATACAGAGAGGAGCATGTTGTCTTCTGAGAGGCTCCACCGAGCAGC
TGACTCAGACAGATACAGACATACATAGCCAAACAGTGAATAGAACTGGT
TTACTATTATGGAAAAAAATAGAAGGAAGGATTGCTGGACCCAAAGGGAA
TAGGAACTCCACAATTAGATAATTGAGTCAACTAACCTGAACCCTTGGGG
CCCTCAGAGTCTGAACCACCAACCAAAGAATATACATGGGCTGGACCTAT
GCCTCCTGCACATATGGAGTAGATGAGTAGCTTGCTCTTCATGTGGGTCC
CAAACAACTGGAAACGGAGTTATCCCAAAAGCTGTTGCCTGTACATGGGA
TATGTTCAACTAGCTCAGCTGCCTTGTCTGGCCTTAGTAGGAGCAGAAGC
ACCTAGCACCTATCCTCTCAGAGATTTGAAGTGTTAAGGTGGTGGTGAAT
ATACCCAGGGTAGCCCCTCGTTCTCAGAGAAGGCGAGGCGTAAATGTTTC
TTTTTTTGTCCTACCCCCTGGCAGGACGCCACCGATTTTCTCTTATTGTG
CATTCCCCGCTCCCCCATTTTCCGCTTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_k05.b1 MSMg01no444_k05.b1 CHROMAT_FILE:
MSMg01no444_k05.b1 PHD_FILE: MSMg01no444_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:36 2005
         (318 letters)



>mm_chr12_15146128_15146845
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttagcagctgcattataagaaagatcatgaatgtgaatttggaacacacccagattaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gcttagcagctgcattataagaaagatcatgaatgtgaatttggaacacacccagaataa 260

                                                                       
Query: 61  tgaaattatgaaaaatcaatatcttagattaattatgttagtacaactaactccttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaattatgaaaaatcaatatcttagattaattatgttagtacaactaactccttttgt 320

                                                                       
Query: 121 ggtcaggacataacagaattgaagtcctgttgagacaggggatgtgtaagataaatatta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ggtcaggacataacagaattgaagtcctgttgagacagggaatgtgtaagataaatatta 380

                                                                       
Query: 181 atggtaagagaacacctttgaaaatgaacttctaaattccatttcttggcttcttttatg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atggtaagagaacacctttgaaaatgaacttctaaattccatttgttggcttcttttatg 440

                                                                       
Query: 241 aaagcaaaatgtaaacacattttgatgagaccatgtgttcctcactatcaactggattgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcaaaatgtaaacacattttgatgagaccatgtgttcctcactatcaactggattgc 500

                             
Query: 301 atttctgaatcacttagg 318
           ||||| ||||||||||||
Sbjct: 501 atttcagaatcacttagg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)