BAC Information

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BAC

Clone NameMSMg01-446D10
Chromosome12 (Build37)
Map Location 31,549,123 - 31,549,306
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18, LOC100043055
Downstream geneAcp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446D10.T7 (MSMg01no446_d10.b1)MSMg01-446D10.TJ (MSMg01no446_d10.g1)
ACCAG534962AG534963
length756717
length of high quality
(start - end)
184 (124 - 307)38 (185 - 222)
definitionCHROMAT_FILE: MSMg01no446_d10.b1 PHD_FILE: MSMg01no446_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:40 2005CHROMAT_FILE: MSMg01no446_d10.g1 PHD_FILE: MSMg01no446_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXATTTCGAGGCTGCGCGGAANNCCGNNA
GTTTGCCGNACTCGCGCGNGNCGACNGGACNNCAANAAAGGNCCAAGGCA
CTATACCTCTTCCCGCCNAANNCAAGGAGNAGCAAGGCTTTTGAAAAGTC
TGGATTTCTCCTCAGCTGTGCTTCCTCGAGTGCATGGGAACTTCAGAGCA
AAGTAGGTGTGACAGCCTGGCCTACCTTTGATTAATAGCTCATTTTCTTG
CTTGGTGCCCATGGGAAACAACTTTGCCGGGATATTTGATGTGTCAAGTC
CGATCTATTTTTTTTTCTCACANCNNCACAGGCCNCNNGNAACCAGCACG
TACAGNACCACCCGCGCCGGCCAGGAGGGCGAGGGGCCGGACGGCGCCAG
GCCCCCCACACCATGCAAAGCCGACCGGGAGGGCCAGGAAGGCCCCATAC
CAGCCACCCCGCAGGCCCAGCGCGACGCCCACACCAGGGCGCCCCCCCCC
GCACACGCGAAGCCCCCAGAGGAGGACGAAAAACTCCAGCACCGCCGGCG
CACAAGACACCCGCGCCACGCNCCGCACAAAGGCCCCGAGGCCCCGCCCT
GCCACCCGAATAAAGCACACCCTCGCCTTTATTTCGCTATCGCACAACCC
GCTTTTTTTTTTTTTTAAATCGCTAGTCTCCCACATCACCCCCCCCAAGT
TTTGATNCTGCTTTGAGTGTTGTTTCCCCCCGCTCTCGCTCGTCTTATCG
ACCTTG
NCGGCCGATTTTACGAGAAGTGGGAGNNTGGGGNNGNCGGTCTTCCAACC
CGNGAANNANAGAAGGATAGCGAAACCCGGGCNGCAGGNGGGAGAGGGNC
NNGGNCNCCNCNCAGGAGATTTAACCCAGCNGAGCAAGCCAAAGAAGCGG
CNAACGAACCANACGCCAGGAAGGCAGGACCGCCAGGAGGAAGGCGGGAC
CNCCAAGAGGAAGGCAGCCCCACACCAAGACAGCGCCGGNCCCGCAAAAN
NCCCATCTCNCCGGAACAGCCCCAAAGCAGCGCCAGGACGGCNCCGGCCA
GAACCGCCCANCACCCCGAATGTTTTTTTCTCCCCTCTCTTCTGTCTCCT
TCTTAATAGATGGTGTCTTCAGTCTACCCATGCTTCCCTTATACCTATTC
CTTCTCCATAGCTACTCTTCCCACCATGTGGCTGAACTCCGCGTTCACCT
ATTCAAACAGCCCGGCTTTCCTTCCTTCTCAACTTCCTTCTCTCCAGCAA
CCGATAGACCTACAACTTGTTTGTTTTGGGCATTCGCCTTTTCCTTTAAC
CCCCACCCTTTTTCCCCTCCGTATTCGCGGTCCAACCCCCTTAGCCCCTC
CCTCCCCCTCTTTCCTATTACCTATGAGCTCCCTCAAAAGACTTCTCCAA
TCCCCCGTGTTCATCTTTTTTTAACCCAGAGTGCCTACCCCCTTTCCCTA
TCCTCTTTACTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_d10.b1 MSMg01no446_d10.b1 CHROMAT_FILE:
MSMg01no446_d10.b1 PHD_FILE: MSMg01no446_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:40 2005
         (184 letters)



>mm_chr12_31548923_31549506
          Length = 584

 Score =  319 bits (165), Expect = 6e-92
 Identities = 179/184 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagnagcaaggcttttgaaaagtctggatttctcctcagctgtgcttcctcgagtgc 60
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggagtagcaatgcttttgaaaagtctggatttctcctcagctgtgcttcctcgagtgc 260

                                                                       
Query: 61  atgggaacttcagagcaaagtaggtgtgacagcctggcctacctttgattaatagctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 atgggaacttcagagcaaagtaggtgtgacagcctggcctacctttgattaatagctcag 320

                                                                       
Query: 121 tttcttgcttggtgcccatgggaaacaactttgccgggatatttgatgtgtcaagtccga 180
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccttgcttggtgcccatgggaaacaactttgccgggatatttgatgtgtcaagtccga 380

               
Query: 181 tcta 184
           ||||
Sbjct: 381 tcta 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)