BAC Information

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BAC

Clone NameMSMg01-448J07
Chromosome12 (Build37)
Map Location 88,641,266 - 88,641,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
Downstream geneSptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448J07.T7 (MSMg01no448_j07.b1)MSMg01-448J07.TJ (MSMg01no448_j07.g1)
ACCAG536760AG536761
length862774
length of high quality
(start - end)
90 (70 - 159)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no448_j07.b1 PHD_FILE: MSMg01no448_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:54 2005CHROMAT_FILE: MSMg01no448_j07.g1 PHD_FILE: MSMg01no448_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGTCGCTAAACGACTCACATAGTTACTCATCCGCNGGAATCNT
TGCATTTCGCCACACTTCCACTCTGAAAGACCCAGCCTTCCTCATCTCTT
CAAATCTTTCATGGAATCATAATTTCTATAGAAGCCGGGTGTGGTGGCGC
ATGTCTTTAATCCGGGCACTTGGGAGCTAGAGGCAGGAGAATTTCTGAGT
TTAAGGCCAGCCTGGTCCACATAGTGAGTTCCAGGACAGTCTTTTCTACT
CAGAGAAACCCTGCCCACTTCACCCCCCATAATAGACAGAATCCCATGAA
ATACCATTCTTTTTTATTCTACACATGCCTGCTCTTCTTGTTTTCGCTCT
GTTTTTTTTTATTTTACAGTGACTTCTGTCTAGGGTTCTCTGCTTCATGT
GTCTCCATTTTCTGATCCCCGCCGATTACTCGTACTTGAAGCTTATTGCC
ACCTTGATTTCCCCGCCCCCTATTTTTTGGACCCCTTTTTTTCAGCTGCC
ACTATTCCATCAATCCCCTTTTGTGCCTTCTTTGCCTCTTCGCCTTTTCA
CTTCTTTTCTTCTATTCCGTCCCCCGCTTTGTTTTTCCTCTTCATTCCTT
AACTCATCCTTATTTTCCCCGATTTATTCTTCTTACCCTTTATTTGGCCA
TTTTGTGAAACACCTTCTCCCCTCCTCGTTTTTACTTTTCTCCTCTACTT
TCTCGCTTCTCTTTTTATGTTTCCCCTCCTCTCCCTCTTCTCTTATTCTC
TTTATTTTTTCGTCTCGTCTCATTCTCTCTCTTTCCTTACTTTCCTCTCC
CTTTCCGCTCTCATTTTTCCCTTCCTTCTCTTACCTCCTTCCGTCTTCCC
ACCCTCGTATCN
TTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAGAGAAGATCTAGTTGCCCAAAGGTCGCCGTTC
AGTGAGTGGCTTACTGTGAAGATCCAACCCGAAGGTCTGGCCGAAAGGGC
TGGGCTGTCCTAAGGATCAGCGACACCAGCTGCAGGACGGATCCTCCGAC
CCCTGCACTCAGGCTTACCCCACCACAGCACACCCGCTGTTCTGGGACTG
TGGCTTGTGTGGTCTCCTGGGACTGACAGTCCTAAAAGCTGAAAGGGGAT
CGGGAGCTGGGACCGTTTTTTTTTTTCGGGTTCCTCATCCCAGGCGACGC
TGTTGAACTTCCTTAGTCCCTCGCAAACCTACCTGGCTGCACGCACACTT
TTGCCTAAGTTCCAAAGCCTCCCACCGCTCGCCGTCGGTCATTCGTGCGT
TCCTGCCTGTGAGGCCCGGGCTAGCTTGCGATTTTGTCTCCCTAATCGTC
TACTACGCCTCTTGCCCCTGCTTTATCCTCTTTCTGCTTTTTTTTTGCTC
TCCCCGGCTCCTTTCTCTTTGCTTTCCCCTCCTTCCCACCGTCTTGTCTC
CCTCCTCCTCCCTTCTATCCCCTTTTTCGCCCCTTCTCCCCCTTTAACCT
CGCCCTTCCTCGTGTTGTTTCTGCCTGCCTACCTGTGCGGTCTTTATTAC
CCCCTCCCTTTTCTTCCCCTATTGGCGTCCTCTCCTGACCCGTTCGCTCT
CTCCAATTATTTATCCTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_j07.g1 MSMg01no448_j07.g1 CHROMAT_FILE:
MSMg01no448_j07.g1 PHD_FILE: MSMg01no448_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:54 2005
         (241 letters)



>mm_chr12_88641066_88641706
          Length = 641

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagttgcccaaaggtcgccgttcagtgagtggcttactgtgaagatccaacccgaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctagttgcccaaaggtcgccgttcagtgagtggcttactgtgaagatccaacccgaaggt 380

                                                                       
Query: 61  ctggccgaaagggctgggctgtcctaaggatcagcgacaccagctgcaggacggatcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctggccgaaagggctgggctgtcctaaggatcagcgacaccagctgcaggacggatcctc 320

                                                                       
Query: 121 cgacccctgcactcaggcttaccccaccacagcacacccgctgttctgggactgtggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cgacccctgcactcaggcttaccccaccacagcacacccgctgttctgggactgtggctt 260

                                                                      
Query: 181 gtgtggtctcctgggactgacagtcctaaaagctgaaaggggatcgggagctgggaccg 239
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtgtggtctcctgggtctgacagtcctaaaagctgaaaggggatcgggagctgggaccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)