Query= MSMg01no448_p20.b1 MSMg01no448_p20.b1 CHROMAT_FILE:
MSMg01no448_p20.b1 PHD_FILE: MSMg01no448_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:27 2005
(465 letters)
>mm_chr12_101777999_101778859
Length = 861
Score = 746 bits (386), Expect = 0.0
Identities = 402/410 (98%), Gaps = 6/410 (1%)
Strand = Plus / Minus
Query: 58 aaacatcgggctggtgaaatggctcagtgggtaagagcacccgactgctcttccgaaggt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaacatcgggctggtgaaatggctcagtgggtaagagcacccgactgctcttccgaaggt 802
Query: 118 caggagttcaaatcccagcaaccacatggtggctcacaaccatccataacgagatctgac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caggagttcaaatcccagcaaccacatggtggctcacaaccatccataacgagatctgac 742
Query: 178 tccctcttctggagtgtctgagggcagctacagtgttcttacatataataaataaataaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccctcttctggagtgtctgagggcagctacagtgttcttacatataataaataaataaa 682
Query: 238 tcttaaaaaaaaaaaa--aactataaacatcggtggctgtgtttaatgatatgcagtctt 295
|||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct: 681 tcttaaaaaaaaaaaaacaactataaacatcggtggctgtattcaatgatatgcagtctt 622
Query: 296 tcttagataggtctttagaagttgcctctgtgtttggtttgtggctattttcaaagttag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttagataggtctttagaagttgcctctgtgtttggtttgtggctattttcaaagttag 562
Query: 356 agtacaatgtctataatagaaagttgtattttaaatttgatagcatatttggaaattgtt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtacaatgtctataatagaaagttgtattttaaatttgatagcatatttggaaattgtt 502
Query: 416 aaaattgcacatgcagtatgaaagtcatgcttccaatgaggtttcttgca 465
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aaaattgcacatgcagtatgaaagtcatg----caatgaggtttcttgca 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 861
Length adjustment: 10
Effective length of query: 455
Effective length of database: 851
Effective search space: 387205
Effective search space used: 387205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_p20.g1 MSMg01no448_p20.g1 CHROMAT_FILE:
MSMg01no448_p20.g1 PHD_FILE: MSMg01no448_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:27 2005
(465 letters)
>mm_chr13_87261889_87262753
Length = 865
Score = 741 bits (383), Expect = 0.0
Identities = 430/465 (92%), Gaps = 32/465 (6%)
Strand = Plus / Minus
Query: 1 atatccctggcagaagctatgggaatctcccagatggcatcagccaacagcatttgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atatccctggcagaagctatgggaatctcccagatggcatcagccaacagcatttgacaa 444
Query: 61 ttccctggaattttgcctcagataaagactgacaataggtttaacatccagaatttctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttccctggaattttgcctcagataaagactgacaataggtttaacatccagaatttctta 384
Query: 121 gggaagacttaatcagtatatttatttgaataaatacatcttttcattaatctattctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggaagacttaatcagtatatttatttgaataaatacatcttttcattaatctattctac 324
Query: 181 ctattctagctctatactttcctataaggaaaatgcaatgtgtttcttcactcaatttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctattctagctctatactttcctataaggaaaatgcaatgtgtttcttcactcaatttcc 264
Query: 241 tgaataacattgtgccctcctttccgtgtcttaccaaagtaactatttaagaatacctaa 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgaataacattgtgtcctcctttccgtgtcttaccaaagtaactatttaagaatacctaa 204
Query: 301 tttaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttcaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagg 144
Query: 361 aagaaagaaagaaagaaagaaagaaaggaagaaagaaagaaagaaaggaaggaagaaata 420
||||| | ||||||||||||| |||||||||
Sbjct: 143 aagaa-g---------------gaaaggaagaaag----------------gaagaaata 116
Query: 421 tatgggagacggggagagaagaagagtcatcttacagttttcagc 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tatgggagacggggagagaagaagagtcatcttacagttttcagc 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
