Query= MSMg01no449_c18.b1 MSMg01no449_c18.b1 CHROMAT_FILE:
MSMg01no449_c18.b1 PHD_FILE: MSMg01no449_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:42 2005
(604 letters)
>mm_chr12_59518454_59519461
Length = 1008
Score = 661 bits (342), Expect = 0.0
Identities = 491/602 (81%), Gaps = 102/602 (16%)
Strand = Plus / Minus
Query: 9 gaattcattgtttatttctgaaccccattttttaatggggctatttgaatttctggagtc 68
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattctttgtttagctctgaaccccattttttaatggggctatttgaatttctggagtc 670
Query: 69 cacctttttgagttttttctatatattggataataactttctatatattggataatgaca 128
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 669 cacctttttgagctttttctatatattgaataataactttctatatattggata-----a 615
Query: 129 tactgtatttcttttttttgttccatttttttattaggtatttagctcatttacatttcc 188
|| ||| ||||
Sbjct: 614 ta----------------------------------------------att----tttc- 606
Query: 189 aatgctataccaaaagtcccccataacatactgtatttctaataatattttatagagttc 248
|| ||||||||||||||||||||||||||||||||||
Sbjct: 605 --tg----------------------catactgtatttctaataatattttatagagttc 570
Query: 249 taggatttcaccaccacaaatttaaatagattctagtaataa---tttttttaatcat-a 304
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct: 569 taggatttcaccaccacaaatttaaatagattctagtaataattttttttttaaccataa 510
Query: 305 aagtggatgggaacacatataaagggtcaggggtataaagggactttctaacctgacacc 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 509 aagtggatgggaacacatataaaggctcaggggtataaagggactttctaacctgacacc 450
Query: 365 tgagttcagtcctggttttccacaagtagcctgaccatacacatacacacacacacaca- 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 449 tgagttcagtcctggttttccacaagtagcctgaccatac----acacacacacacacat 394
Query: 424 -cacacacacacacacacacacacacacacacacacacacacagagagagagagagaata 482
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 393 gcacacacacacacacacacacacacacacacacacacacac------------agaata 346
Query: 483 aatgtaaaaagtatttaagaatgtggcaagcagttttataagtcttaatgcagtccacac 542
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 345 aatgtaaaaagtatttaagaatatggcaagcagttttataagtcttaatggagtccacac 286
Query: 543 tctggcattaccacaatcatcttagtgtccttctcttgatcagtctgatctgaagatctt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctggcattaccacaatcatcttagtgtccttctcttgatcagtctgatctgaagatctt 226
Query: 603 ga 604
||
Sbjct: 225 ga 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1008
Length adjustment: 10
Effective length of query: 594
Effective length of database: 998
Effective search space: 592812
Effective search space used: 592812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_c18.g1 MSMg01no449_c18.g1 CHROMAT_FILE:
MSMg01no449_c18.g1 PHD_FILE: MSMg01no449_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:42 2005
(439 letters)
>mm_chr12_59348112_59348950
Length = 839
Score = 661 bits (342), Expect = 0.0
Identities = 404/451 (89%), Gaps = 42/451 (9%)
Strand = Plus / Plus
Query: 1 actgtatcaatgccatttgcccaacactgccgtaggcagttacatttgcaatatccagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 actgtatcaatgccatttgcccaacactgccgtaggcagttacatttgcaatatccagtt 248
Query: 61 ttacttctggggcttaactaaaaaaatgaattacaaccaatgccctccaggacacagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttacttctggggcttaactaaaaaaatgaattacaaccaatgccctccaggacacagcaa 308
Query: 121 ttttgggagccttttttttttttt------------aaatcacagcgagcaatgtagaga 168
||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 ttttgggaggctttttttttttttttttttttttttaaatcacagcgagcaatgtagaga 368
Query: 169 gtattcctctgtctcaggctttaagaagacacattttggccatatttaagattccaatca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtattcctctgtctcaggctttaagaagacacattttggccatatttaagattccaatca 428
Query: 229 ttgaacactccttgagtcttttatttgtgcacttagttctgctatttgaaaagagggcag 288
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 ttgaacactccttgagtcaattatatgtgcacttagttctgctatttgaaaagagggcag 488
Query: 289 aatgtgaaaaatgggagagtatctgttgcaaataatatatatatatatatatatatatat 348
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 489 aatgtgaaaaatgggagagtatctgttgcaaataatatatatatatata-a--------- 538
Query: 349 atatatatatatatatatataattataagttcctgccncaccttatagtatacagtgggt 408
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 539 --------------------aattataagttcctgccacaccttatagtatacagtgggt 578
Query: 409 tagagtgattagagaaaagaatgcattcagt 439
|||||||||||||||||||||||||||||||
Sbjct: 579 tagagtgattagagaaaagaatgcattcagt 609
Score = 81.9 bits (42), Expect = 8e-20
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 324 tatatatatatatatatatatatatatatatatatatatatatata 369
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 760 tatatatatatatatatatatatatatatatatatatatacatata 715
Score = 80.0 bits (41), Expect = 3e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 323 atatatatatatatatatatatatatatatatatatatatatata 367
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 759 atatatatatatatatatatatatatatatatatatatacatata 715
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 323 atatatatatatatatatatatatatatatatatatatatatatata 369
||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 749 atatatatatatatatatatatatatatacatatacatatatatata 703
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 323 atatatatatatatatatatatatatatatatatatatatatatata 369
||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 751 atatatatatatatatatatatatatatatacatatacatatatata 705
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 323 atatatatatatatatatatatatatatatatatatatatatatata 369
||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 753 atatatatatatatatatatatatatatatatacatatacatatata 707
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 323 atatatatatatatatatatatatatatatatatatatatatatata 369
||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 755 atatatatatatatatatatatatatatatatatacatatacatata 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
