BAC Information

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BAC

Clone NameMSMg01-449E11
Chromosome12 (Build37)
Map Location 84,577,059 - 84,577,252
singlet/doubletsinglet
Overlap geneDpf3
Upstream geneLOC432675, EG666911, Rgs6
Downstream geneWdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E11.T7 (MSMg01no449_e11.b1)MSMg01-449E11.TJ (MSMg01no449_e11.g1)
ACCAG537290AG537291
length736747
length of high quality
(start - end)
242 (77 - 318)196 (123 - 318)
definitionCHROMAT_FILE: MSMg01no449_e11.b1 PHD_FILE: MSMg01no449_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:51 2005CHROMAT_FILE: MSMg01no449_e11.g1 PHD_FILE: MSMg01no449_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGAGTCTATXXXXXXXXXXXXXXXXXXXXXXXCTAAATCGNGAGAGGCNG
CGGAATCTTTGTTTTATCTAGAACCGATTTTTTAATGGGGTTATTTGAAT
TTCTGGAATCCAGTTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC
CTATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTA
TGATATCCCGTTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGTT
CTGTTTAGGAATTTTTCTTCCTTGTTTTTATCTTCCAGGGTTTTCCCTAC
TTTCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCTTTGA
TCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATTAATTCAC
ATTCTTCTACATAATAACCACCAGTTGTGCCAGCACCATTAGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGTGTTTAGCTTCCTTGTCAAAGATCAAGA
GACCTTAGGTGTGTGGATTCATTTCTTGGGCCTTCAATTCCATTCCATTG
ATCTACCTGCCTGCCATTTGACCAGTACCTTGCATTTTTTTATCACAATT
GCTCTGTTTTTTTTTTTTTAATGTCAGGTATGTGGAATTCACCAAAGGTT
CTTTTTATGTTTGAAAACAGTTTTGGTTCCCTTAAG
GGTTTCCGATGAAGTGGTAGCCTGGGGGCGCCTGTTCANGACGGGGGGTG
AACTATAGAATTTCCAAGAAAGTCGAGATGGGAGGCTCATGGTCTGACGT
CAGCTGCCTGAGAGTTTTGCCACCAGTCTGGCTCAGACAGGATCCAGGTG
GAGAGCCTTCCCGTCTTCCATACTATCACTAAGGACAGTGGGGAATCTGA
CTATTCAAAGGAGATTTGAGCCAAAGGAACCCTGCCTGACAGCTCTCAAG
TGTTCCAAACTCCAGGGTACATTTCATGGTCTCTAGCACTTTAAACCCAG
ATTCGCAGCCACACTCTTCCTCCGTTTGTCCCTAGAGACCCTCCAGTCCC
TCTGACTGATAGCTGCGCGCTCCAAGGATCCAGCAGAGCTTTCTCTAAGT
CCACCAACAGATAAACCTAATGCTGCTTGGGAACAGGCTGACATAGTCTT
CCCCAAGGAGGGCATTTATCTGGCCAAAAAGTAAGAGCCTGGTGTGACTT
CTTTGGGGAATAGCTAAAAGCTAAATCCTGGTTGTAGCATGTGCAAAGAA
GTGGGGGGGGGGAGGGGGTCTTTCTTATCTCTCTCATTCTCCCTCACTCC
ATTCCTCTGTATGTCCTTCTTGTATACAGTTTATACTCTAATTCTATGTT
ACCCCACCTTTATTTTTTCTTTTTTTTTTCCGCACCGCTTTATAGTAATG
TAGTCCGCGTTATTTGTCATACTACCTTGTTTTATGTACTCTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e11.g1 MSMg01no449_e11.g1 CHROMAT_FILE:
MSMg01no449_e11.g1 PHD_FILE: MSMg01no449_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:51 2005
         (196 letters)



>mm_chr12_84576859_84577454
          Length = 596

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtctggctcagacaggatccaggtggagagccttcccgtcttccatactatcactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtctggctcagacaggatccaggtggagagccttcccgtcttccatactatcactaa 260

                                                                       
Query: 61  ggacagtggggaatctgactattcaaaggagatttgagccaaaggaaccctgcctgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagtggggaatctgactattcaaaggagatttgagccaaaggaaccctgcctgacag 320

                                                                       
Query: 121 ctctcaagtgttccaaactccagggtacatttcatggtctctagcactttaaacccagat 180
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcaagtggaccaaactccagggtacatttcatggtctctagcactttaaacccagat 380

                         
Query: 181 tcgcagccacactc 194
           ||||||||||||||
Sbjct: 381 tcgcagccacactc 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)