BAC Information

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BAC

Clone NameMSMg01-449H17
Chromosome12 (Build37)
Map Location 31,363,353 - 31,363,871
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449H17.T7 (MSMg01no449_h17.b1)MSMg01-449H17.TJ (MSMg01no449_h17.g1)
ACCAG537442AG537443
length765764
length of high quality
(start - end)
554 (51 - 604)519 (81 - 599)
definitionCHROMAT_FILE: MSMg01no449_h17.b1 PHD_FILE: MSMg01no449_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:07 2005CHROMAT_FILE: MSMg01no449_h17.g1 PHD_FILE: MSMg01no449_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATTCTATTTCCCCATTCCAAGGATGTTCATGTGCTGCCC
CCAGTCTCTTTCTCTGTACCTAACCTCTTTGTGTCTACCATTTGTAGCTT
GGTTGTCATTTATTAAACAGCTAACATCCACATATAGGCACATACATACC
ACATTTATTTTTCTGAGTATGGGTTACCTCAATTTTTTTTTCTAGTTCCA
TTTGCTTGTAAATGTCATGATGTCATTTTTTAAGCAGCAGAGTAATATTC
CATTGTGTACATGTGCCACATTTTCTTTATCCATTCTTCTGTTGAGAGAT
CTGTAGGTTGTTTCTAATCTCTGGCTACTACGAATAGAGCAGTAATGAAC
ATGGTTGAATAAGTGTCCTGGCAGTAGGATGAAGTGCCCTTTAGGGTTTA
TGCCAAAGAGTAGTGTAATTGAATCTTGAAGTAGATTGATTCCCATCTTT
CTGAGGAACTGCCACACTGATTTTCATAGTAGCTATTCAAGCTTGCACTC
CCACCAGCAATGAATAGGTGTTCCCCTTGTTTTACATTCTTGCTAGCATG
AGCGGNCACTTGTGTTATTGATCTTATCCATTCTGACAGGGGTAAAATTG
AATCTCAACATAGATTTGATTTGCATTTTCCTGACGACTAAGGATGTTGA
ACATTCTTACAAAGTAAATTTAGCCACCTGAGTTTCTTCTATTGAAAAAT
CTCTGTTTAGAACCG
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGTCAAACCCAAACCTG
GAGAAATGTTCAGATACTAACTCAGATCTTTATTTTTACTAATTCTGTTT
AATTGTTTAAGTCTTTATCTTTATTCTGTCTTTTTAGAAATAGGCCCACT
TAATTCCGTTTATCTAATTTGCAGGCAGATAGAAGATTGTAGTAAACTCC
TCAGCCTTCTCCCAGTCCCTCTGATCTTTCATGACCTTCCTTTCTTTCTT
AATTTTATATAAGACTCTAGTTTTTTCTTGTTTTATCAAGCAGGTTTGTC
AATTTTGATTTCTTAAGAAAAGAATGCCTCTCTTATTACTGAATTAATCC
CCAAAGTAAATCTTTATCATTCCTTTTTTAAAAAATGATTTCTCAATATT
GAATTTGCTTGATACCAGCTCCAATTTCAGACAGTGGAACTTGAAGTTAT
TATCTGAAAATAAGACATTTTAAGGCCAGAGAGAGTCCTCCCTGGACCGC
CCAGCCTCCAACTGGCCCATGCCTCAGGCCTTCAGCCACCATCCTGAGAG
GTACAAGTTTCTGTTGTTCATCAGCCAGCCAGTGTGTGGAATGGTTTCTG
TACCAGCTGGAGCTGATTATTGTAGGTTCTGGAGNCTCCAACCATTTAAT
CCCTTCCTTAATCATAATTCTCCCCTTTCCTTCCTGGGCTCCCCCCAGGG
ATGTGGCCTCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_h17.g1 MSMg01no449_h17.g1 CHROMAT_FILE:
MSMg01no449_h17.g1 PHD_FILE: MSMg01no449_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:07 2005
         (519 letters)



>mm_chr12_31363153_31364071
          Length = 919

 Score =  942 bits (487), Expect = 0.0
 Identities = 511/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagtcaaacccaaacctggagaaatgttcagatactaactcagatctttatttttact 60
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagccaaacccaaaccaggagaaatgttcagatactaactcagatctttatttttact 260

                                                                       
Query: 61  aattctgtttaattgtttaagtctttatctttattctgtctttttagaaataggcccact 120
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 261 aattctgtttaattgtttaagtctgtatctttattctgtctttttagaaatatgcccact 320

                                                                       
Query: 121 taattccgtttatctaatttgcaggcagatagaagattgtagtaaactcctcagccttct 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 taattccgtttatctaatttgcaggcagatagaagtttgtagtaaactcctcagccttct 380

                                                                       
Query: 181 cccagtccctctgatctttcatgaccttcctttctttcttaattttatataagactctag 240
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 381 cccagtccctctgatctttcatgatcttcctttctttcttaattttatataagattctag 440

                                                                       
Query: 241 ttttttcttgttttatcaagcaggtttgtcaattttgatttcttaagaaaagaatgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttcttgttttatcaagcaggtttgtcaattttgatttcttaagaaaagaatgcctc 500

                                                                       
Query: 301 tcttattactgaattaatccccaaagtaaatctttatcattccttttttaaaaaatgatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tcttattactgaattaatccccaaagtaaatctttatcattccttttttaaaaagtgatt 560

                                                                       
Query: 361 tctcaatattgaatttgcttgataccagctccaatttcagacagtggaacttgaagttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcaatattgaatttgcttgataccagctccaatttcagacagtggaacttgaagttat 620

                                                                       
Query: 421 tatctgaaaataagacattttaaggccagagagagtcctccctggaccgcccagcctcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatctgaaaataagacattttaaggccagagagagtcctccctggaccgcccagcctcca 680

                                                  
Query: 481 actggcccatgcctcaggccttcagccaccatcctgaga 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actggcccatgcctcaggccttcagccaccatcctgaga 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)