Query= MSMg01no449_j23.b1 MSMg01no449_j23.b1 CHROMAT_FILE:
MSMg01no449_j23.b1 PHD_FILE: MSMg01no449_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:17 2005
(544 letters)
>mm_chr12_84818843_84819786
Length = 944
Score = 928 bits (480), Expect = 0.0
Identities = 531/562 (94%), Gaps = 24/562 (4%)
Strand = Plus / Plus
Query: 1 ttcctgagtactgggatcataggcaagcactaccatgcctcatttatgcagtactagagt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 188 ttcctgagtactgggatcataggcaagcacta-----cctcatttatgcagtactagagt 242
Query: 61 tcaaact------------------ccaagcactcaatcaactcagttccatctttaggc 102
||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 243 tcaaactcagagcttcgtgtgttaaccaagcactcaaccaactcagttccatctttaggc 302
Query: 103 tggccttgaactcccaagggagccaccaatctggcctatcatcccaggtactccctccct 162
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 303 tggccttgaactcccaagggagccaccaatctggcctgtcatcccaggtactccctccct 362
Query: 163 caccattgtgacagatttcctcataagaaattcttaccctcggggctggtgagatggctc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caccattgtgacagatttcctcataagaaattcttaccctcggggctggtgagatggctc 422
Query: 223 agtgggtaagagcacctgactgctcttctgattgttcggagttcaaatcccagcaaccac 282
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 423 agtgggtaagagcacctgactgctcttctgaaggttcggagttcaaatcccagcaaccac 482
Query: 283 atggtggctcacaaccatccgtaacaagatctgactccctcttctggagtgtctgaagac 342
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atggtggctcacaaccatctgtaacaagatctgactccctcttctggagtgtctgaagac 542
Query: 343 agctaaagcgtacttacataaaataaataaataaatctttaaaaaaaaaaaaaaacaaat 402
||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 543 agctacagtgtacttacataaaataaataaataaatctttaaaaaaaaaaaaaa-caaat 601
Query: 403 tcttaccctcacagcaaaggtggcacaaggggccttgcctggagctagagaagggaggag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcttaccctcacagcaaaggtggcacaaggggccttgcctggagctagagaagggaggag 661
Query: 463 tgagtcttgagatttcccgattcctgggcaattcccactccctaaacactagtgctatac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgagtcttgagatttcccgattcctgggcaattcccactccctaaacactagtgctatac 721
Query: 523 ctagagaaggagtagggaagac 544
||||||||||||||||||||||
Sbjct: 722 ctagagaaggagtagggaagac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_j23.g1 MSMg01no449_j23.g1 CHROMAT_FILE:
MSMg01no449_j23.g1 PHD_FILE: MSMg01no449_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:17 2005
(482 letters)
>mm_chr12_84921467_84922348
Length = 882
Score = 870 bits (450), Expect = 0.0
Identities = 468/474 (98%)
Strand = Plus / Minus
Query: 7 aattctatggaaatagtttggggtttcttaagggaaaaatccctcactttctacctcttt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aattctatggaaatagtttggggtttcttaagggaaaaatccctcactttctacctcttt 621
Query: 67 ccttcctctacaagaagagaagatgtagcactgggggtgttcatgtgtggtttgccagca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccttcctctacaagaagagaagatgtagcactgggggtgttcatgtgtggtttgccagca 561
Query: 127 tctggctagtgatggggacaaggtgaacttagcatatgcctggactatagaaaaactcta 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctggctagtgatggggacaaggtgaacttagcatatgcctggactatagaaaaactcta 501
Query: 187 cttgtattttagggtactggtctcagttgtaattagagaatctcttggtttctttggctc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttgtattttagggtactggtctcagttgtaattagagaatctcttggtttctttggctc 441
Query: 247 tcttcctctgaactcattctttaaagataagaaagcaaagtgaactagaaaccaacaaat 306
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcttcctctgaactcagccaaaaaagataagaaagcaaagtgaactagaaaccaacaaat 381
Query: 307 acaaatcattaatagaaactcagtgttgaggataactgcccatataaattagttatgaat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 acaaatcattaatagaaactcagtgttgaggataactgcccatataaattagttaagaat 321
Query: 367 ctcagaggaaaatgataaactaatcacttgttggattggggtaggacttatcacgaggtt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcagaggaaaatgataaactaatcacttgttggattggggtaggacttatcacgaggtt 261
Query: 427 tctgttgtgatggggtcagggagctctggatagtgctttgtgttacttggggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctgttgtgatggggtcagggagctctggatagtgctttgtgttacttggggat 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
