BAC Information

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BAC

Clone NameMSMg01-449O24
Chromosome12 (Build37)
Map Location 57,924,863 - 58,108,766
singlet/doubletdoublet
Overlap geneSlc25a21
Upstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449O24.T7 (MSMg01no449_o24.b1)MSMg01-449O24.TJ (MSMg01no449_o24.g1)
ACCAG537788AG537789
length767783
length of high quality
(start - end)		453 (53 - 505)416 (86 - 501)
definitionCHROMAT_FILE: MSMg01no449_o24.b1 PHD_FILE: MSMg01no449_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:41 2005CHROMAT_FILE: MSMg01no449_o24.g1 PHD_FILE: MSMg01no449_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,924,863 - 57,925,309)(58,108,353 - 58,108,766)
sequence
CTTTTTGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTATTCTCTCACCTTGGGACCTGCCACCATTGCTTT
CCCCTTTAAACACAATGAGATTTCAAAAAGAGAACAACAAAAACGGTGTG
TGAAAACTCAGCCAGTTTTGGAGCACACATAGGTATACTAGCTTTAGGGC
TCAGTGTCTGGATGCTTTGAAACATGGTCAACATTCTTAGAGAAGTTCAA
ACATTAATGCAGAAATTAACATTTGATAAGGAAAAGATGAAAGTAAAGGT
AAGGTCGGTCTTATAGAGAATTAACGCTATTCCAGGCAATTGTTAAAAAA
ACATCAACAAGACAGATGTCAATGTAGTGCGCAAAACAGTGCTAAGTGTG
ACATGGTTTCCTGAAATCTACCAAATGGCAGCAAGAAGTCCTTAAAATTA
TTCTTTCCTCATGTGACGTCAAAAACATACCAAGCACCATAGGCGTAACG
AATGCAGAGAATCACTTAAGTAAAGGCCGTGCTATTTTTAACATCGTCCT
AAACTTTTTGATTTCCATCCGCGTGAGGGCAAAGGGTTTCGGGGAACTGT
GCCTTGCAAAAAGCCCTGTTTTATCACAAAGGTGGGGAAAGCTCCAACCT
GAACTGGTATAAAACCCCGCGGAAAATGTCGGGGTTGGGGACACACCACT
CTTTTTTTTGGGGAACCCTGGCTAAAACTAACCCCATTTTAAGTCCTTTG
ATCTCGGATCTCCGATG

NTTTTTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAAAGGTCATTGA
AGGAGGTGCCAAGAAAGGAGGTGATAGTGAAGAGATAAGACTCTAGTCCC
TCCCAAATCTATCTCATTTGAAGAAATCTGCTACTGAGTTTGCTAATTGT
AAATTGCCAACGTTAAGAAACTTTCACCCAGGACAGATGACAGTGGGTAG
TCAAGTGTAGTGCCGGGGAATCAGGAACAGTGAGTGCTGAGGTATAAGAA
TCATACGCACACACAGAGAGAAGTGGAGACACTTCCTGTGCACTGCTCAG
TGACAGAACTAGCAAAATCCCGAGCTCTTGACCCTGACTCTTGGTTGGAA
GTGGCACTCACTCAGGACACACAATAGTTTTTGTTTCTGATATCTGAGCT
GAATACATTTAAAAACAAAACAAAACAAAACAAACAAAACAAAACATTCT
CATGAGTTCCTTTGAATAACTCAGGAGTTTAGNAAATTTGATTTGTGTTC
ATGTTTCTTGGAAGGCCTTTTCTCCCTGGAACAAATGTTGTGATGTTTTA
TTAAAAAAAATTCAAGGGCCCCCCTGCTTGTGTTCCAGACACCCCGAACC
CCGTAACCCCCCTGAATCTCGAATACACCCCCCCCCCCTTTTTTTTTCTT
TTTTTTTTTTTTGTAAAGGGTTTTCTTTAAAATATTCCCCCGGGCCACAA
AGGGGGGGTAAATAAAACCCTCCTGAATCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_o24.b1 MSMg01no449_o24.b1 CHROMAT_FILE:
MSMg01no449_o24.b1 PHD_FILE: MSMg01no449_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:41 2005
         (453 letters)



>mm_chr12_57924657_57925509
          Length = 853

 Score =  810 bits (419), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcatttattctctcaccttgggacctgccaccattgctttcccctttaaacacaatga 66
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 attcgtttattctctcaccttgggacctgccaccattgctttcccctttaaacataatga 266

                                                                       
Query: 67  gatttcaaaaagagaacaacaaaaacggtgtgtgaaaactcagccagttttggagcacac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatttcaaaaagagaacaacaaaaacggtgtgtgaaaactcagccagttttggagcacac 326

                                                                       
Query: 127 ataggtatactagctttagggctcagtgtctggatgctttgaaacatggtcaacattctt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ataggtatactagctttagggctcagtgtctggatgctttgaaacatggtcaacattctt 386

                                                                       
Query: 187 agagaagttcaaacattaatgcagaaattaacatttgataaggaaaagatgaaagtaaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agagaagttcaaacattaatgcagaaattaacatttgataaggaaaagatgaaagtaaag 446

                                                                       
Query: 247 gtaaggtcggtcttatagagaattaacgctattccaggcaattgttaaaaaaacatcaac 306
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 gtaaggtcggtcttatagagaattaacactattccaggcaattgttaaaaaaacatcaac 506

                                                                       
Query: 307 aagacagatgtcaatgtagtgcgcaaaacagtgctaagtgtgacatggtttcctgaaatc 366
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 507 aagacagatgtcaatgtagtgcgcaaaatagtgctaagtgtgacatggtttcctgaaacc 566

                                                                       
Query: 367 taccaaatggcagcaagaagtccttaaaattattctttcctcatgtgacgtcaaaaacat 426
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 567 taccaaatggcagcaagaagtccttaaaattattctttcctcctgtgacgtcaaaaacat 626

                                      
Query: 427 accaagcaccataggcgtaacgaatgc 453
           ||||||||||||||||||||| |||||
Sbjct: 627 accaagcaccataggcgtaacaaatgc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_o24.g1 MSMg01no449_o24.g1 CHROMAT_FILE:
MSMg01no449_o24.g1 PHD_FILE: MSMg01no449_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:41 2005
         (416 letters)



>mm_chr12_58108191_58109006
          Length = 816

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaaaggtcattgaaggaggtgccaagaaaggaggtgatagtgaagagataagactcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cacaaaggtcattgaaggaggtgccaagaaaggaggtgatagtgaagagataagactcta 517

                                                                       
Query: 61  gtccctcccaaatctatctcatttgaagaaatctgctactgagtttgctaattgtaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtccctcccaaatctatctcatttgaagaaatctgctactgagtttgctaattgtaaatt 457

                                                                       
Query: 121 gccaacgttaagaaactttcacccaggacagatgacagtgggtagtcaagtgtagtgccg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 456 gccaacgttaagaaactttcacacaggacagatgacagtgggtagtcaagtgtagtgccg 397

                                                                       
Query: 181 gggaatcaggaacagtgagtgctgaggtataagaatcatacgcacacacagagagaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gggaatcaggaacagtgagtgctgaggtataagaatcatacgcacacacagagagaagtg 337

                                                                       
Query: 241 gagacacttcctgtgcactgctcagtgacagaactagcaaaatcccgagctcttgaccct 300
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 336 gagacacttcctgtgcactgctcaatgacagaaccagcaaaatcccgagctcttgaccct 277

                                                                       
Query: 301 gactcttggttggaagtggcactcactcaggacacacaatagtttttgtttctgatatct 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gactcttggttggaagaggcactcactcaggacacacaatagtttttgtttctgatatct 217

                                                                 
Query: 361 gagctgaatacatttaaaaacaaaacaaaacaaaacaaacaaaacaaaacattc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gagctgaatacatttaaaaacaaaacaaaacaaaacaaacaaaacaaaacattc 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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