BAC Information

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BAC

Clone NameMSMg01-450G22
Chromosome12 (Build37)
Map Location 85,350,118 - 85,489,805
singlet/doubletdoublet
Overlap geneAcot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2
Downstream geneC130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450G22.T7 (MSMg01no450_g22.b1)MSMg01-450G22.TJ (MSMg01no450_g22.g1)
ACCAG538164AG538165
length822786
length of high quality
(start - end)
256 (73 - 328)495 (80 - 574)
definitionCHROMAT_FILE: MSMg01no450_g22.b1 PHD_FILE: MSMg01no450_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:21 2005CHROMAT_FILE: MSMg01no450_g22.g1 PHD_FILE: MSMg01no450_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(85,489,552 - 85,489,805)(85,350,118 - 85,350,612)
sequence
ATTAGTCCTACATTCACCANACGANTCACTATAGTCAGAGGATCCGCGGA
ATTCTCTTTCCTTCCCTTGTGGGGAGGAACCGAGTAGTTGCAGAGTGGGA
TCAGGTGGTTCCCGGAAGTCAGAGTTAAAGACTGAATTCATAGAATGGAT
GAGCAATATGAGATAAGTCCGTCGTGGTAGATGCGTATCAATAAAGCCAG
CTTAAATCCACGGCAAAATTAAATAAAGCATGCGTAGCAATAGCTAAGAA
AGAATCAGGGAAGGCGGGGGGGGGGCTGTAAAAAGAAATGCGCCGTCATA
GAATAGACTCCTCAAACCCCTTCTTGTTTCCATAGCAACCGCCAGATCCT
CTGGAGCCCGCGCATCTCGCGTCGTCATGGACACAGTTGTCACGGTGACA
CTGGGGGAGACAAGCGGACCGGATCCGCCCTCCAATGTAGTTGCACGCCG
CCCGTTTGCGGTAGCGCGCGGACATAATCGTTAAGCAGGAGTTGCCTTCC
GTCCAATTTCTTCCCCCTTCCCGTTGTTTTCTTGCCGTTTGGGTTTCCGG
TGATCCGAAAAGGCCCTCTCTCCCCCCGGTATACCATTCCACGGTCTCTC
CGGGGGACCCTTTCCCTCCCCGCGTTGTCCGTTTATTACTTTTTCTTTAC
TTTTTCTCCTTCCTTTCTCCCTATCTCCCTTTTTCCTTCTTCTTTTTCCC
TTTTTCCCCCTTTTTCCTTGTTCCTTCTCTTTCTTTTTTTCCCCTCTCAT
CTTTCTCCCCTCTCTTCTTTTTTCCTTTCCTCTTCCTTTCTCTCCTACTT
TTATCTTTTATCTTCCCCGCCG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAATTCTTGGTCAAAGACT
GCCGGCTAAGAAGGAACCAGGCCAAGTGTGTCTCTTGGGAACCCTCTGAA
TTTCAATGAGGAACTGTAGCTTCTATTCTTTTCAGCTTTGGCTGTCATTG
TGCTCTGATTTAGACACTTTGTGGACTCTCCAGCAGGTTCTTTGTTCTTA
GCAAACATTCTTCCTTTCAATTGCGAAACCAGGATTTGCACAAAGAAGTC
TCACAACTCTTAGGAGGTGTCTGTCTGATTTCAACCAATGGGACTGCAGC
GAGTGGTCCCGCCCGCAACTACTAACTACTCCAGGAGCCCAGGCCACCCT
CCTCTTCCAGTCCAGCTCGAGATGGAGGCGACGCTGAACCTTGAGCCCTC
GGGCCGCAGCTGCTGGGACGAACCGCTGAGCATCGCCGTGCGCGGCCTGG
CCCCGGAGCAGCCCGTCACGCTGCGCTCTGTCCTGCGCGACGAGAAGGGC
GCGCTCTTCCGAGCCCACGCGCGCTACCGCGCGGACTCCCACGGCGAGCT
GGACCTGGCGCGCACGCCCGCGCCTGTGCGGTAGCTTTCTCGGGGTCCGA
GGCCAGGGGGCTTGCTCTGGTCCTTGTAATCCCAATCGGCCTTTTTTGCC
AATTGGGCTAACCCAAAATGTCAAACCCCTTTTTGTGGTGAATTCTTTTT
CCTTGCACCCTCACTTAACCTCATCCCTTGTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_g22.b1 MSMg01no450_g22.b1 CHROMAT_FILE:
MSMg01no450_g22.b1 PHD_FILE: MSMg01no450_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:21 2005
         (256 letters)



>mm_chr12_85489352_85490007
          Length = 656

 Score =  476 bits (246), Expect = e-139
 Identities = 252/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaggaaccgagtagttgcagagtgggatcaggtggttcccggaagtcagagttaaagac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggaggaaccaagtagttgcagagtgggatcaggtggttcccggaagtcagagttaaagac 395

                                                                       
Query: 61  tgaattcatagaatggatgagcaatatgagataagtccgtcgtggtagatgcgtatcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgaattcatagaatggatgagcaatatgagataagtccgtcgtggtagatgcgtatcaat 335

                                                                       
Query: 121 aaagccagcttaaatccacggcaaaattaaataaagcatgcgtagcaatagctaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaagccagcttaaatccacggcaaaattaaataaagcatgcgtagcaatagctaagaaag 275

                                                                       
Query: 181 aatcagggaaggcggggggggggctgtaaaaagaaatgcgccgtcatagaatagactcct 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 274 aatcagggaaggcgggggggggggtgtaaaaagaaatgcgccgtcatagaatagactcct 215

                         
Query: 241 caaaccccttcttg 254
           ||||||||||||||
Sbjct: 214 caaaccccttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_g22.g1 MSMg01no450_g22.g1 CHROMAT_FILE:
MSMg01no450_g22.g1 PHD_FILE: MSMg01no450_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:21 2005
         (495 letters)



>mm_chr12_85349918_85350812
          Length = 895

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaattcttggtcaaagactgccggctaagaaggaaccaggccaagtgtgtctcttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaattcttggtcaaagactgccggctaagaaggaaccaggccaagtgtgtctcttggg 260

                                                                       
Query: 61  aaccctctgaatttcaatgaggaactgtagcttctattcttttcagctttggctgtcatt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccctctgaatttcaacgaggaactgtagcttctattcttttcagctttggctgtcatt 320

                                                                       
Query: 121 gtgctctgatttagacactttgtggactctccagcaggttctttgttcttagcaaacatt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctttgatttagacactttgtggactctccagcaggttctttgttcttagcaaacatt 380

                                                                       
Query: 181 cttcctttcaattgcgaaaccaggatttgcacaaagaagtctcacaactcttaggaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctttcaattgcgaaaccaggatttgcacaaagaagtctcacaactcttaggaggtg 440

                                                                       
Query: 241 tctgtctgatttcaaccaatgggactgcagcgagtggtcccgcccgcaactactaactac 300
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtctgaggccaaccaatgggactgcagcgagtggtcccgcccgcaactactaactac 500

                                                                       
Query: 301 tccaggagcccaggccaccctcctcttccagtccagctcgagatggaggcgacgctgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaggagcccaggccaccctcctcttccagtccagctcgagatggaggcgacgctgaac 560

                                                                       
Query: 361 cttgagccctcgggccgcagctgctgggacgaaccgctgagcatcgccgtgcgcggcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgagccctcgggccgcagctgctgggacgaaccgctgagcatcgccgtgcgcggcctg 620

                                                                       
Query: 421 gccccggagcagcccgtcacgctgcgctctgtcctgcgcgacgagaagggcgcgctcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccccggagcagcccgtcacgctgcgctctgtcctgcgcgacgagaagggcgcgctcttc 680

                          
Query: 481 cgagcccacgcgcgc 495
           |||||||||||||||
Sbjct: 681 cgagcccacgcgcgc 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)